-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_336

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60223-T1
Couldn't classify 104, 261
Couldn't classify 7836, 7964
Sorry, prediction snap_scaffold_336-snap.1-T1 fails validation.
(GTA)	 AG	104-261	GT	AGG
(TGC)	 AG	1967-2041	GT	TGG
(GCA)	 AG	2158-2245	GT	GGG
(GGA)	 AG	3606-3648	GT	AGG
(GGT)	 AG	4091-4232	GT	AGG
(GGG)	 AG	4791-4877	GT	GGG
(GAC)	 AG	7836-7964	GT	AGG
-recovered snap_scaffold_336-snap.1-T1, internal, 104, 261
-recovered snap_scaffold_336-snap.1-T1, internal, 1967, 2041
-recovered snap_scaffold_336-snap.1-T1, internal, 2158, 2245
-recovered snap_scaffold_336-snap.1-T1, internal, 3606, 3648
-recovered snap_scaffold_336-snap.1-T1, internal, 4091, 4232
-recovered snap_scaffold_336-snap.1-T1, internal, 4791, 4877
-recovered snap_scaffold_336-snap.1-T1, internal, 7836, 7964
Couldn't classify 1, 137
Sorry, prediction Augustus_model.g39867.t1 fails validation.
(CTG)	 CC	1-137	GT	AGG
(TCC)	 AG	1394-1424	GT	AGG
(TGC)	 AG	1967-2041	GT	TGG
(GGA)	 AG	3606-3628	TC	AGT
-recovered Augustus_model.g39867.t1, terminal, 3606, 3628
-recovered Augustus_model.g39867.t1, internal, 1394, 1424
-recovered Augustus_model.g39867.t1, internal, 1967, 2041

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_336-snap.3-T1
Couldn't classify 7142, 7184
Sorry, prediction snap_scaffold_336-snap.2-T1 fails validation.
(ATG)	 AA	1250-1308	GT	CGG
(AGC)	 AG	4222-4255	GT	TGG
(GTG)	 AG	5735-5945	GT	GGG
(GCC)	 AG	6911-7070	GT	GTG
(CTC)	 AG	7142-7184	GT	AGG
-recovered snap_scaffold_336-snap.2-T1, initial, 1250, 1308
-recovered snap_scaffold_336-snap.2-T1, internal, 4222, 4255
-recovered snap_scaffold_336-snap.2-T1, internal, 5735, 5945
-recovered snap_scaffold_336-snap.2-T1, internal, 6911, 7070
-recovered snap_scaffold_336-snap.2-T1, internal, 7142, 7184

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8002
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support