-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_335

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 211, 357
Couldn't classify 7064, 7186
Sorry, prediction Augustus_model.g39866.t1 fails validation.
(CTG)	 AG	211-357	GT	AGG
(ATC)	 AG	624-732	GT	AGG
(GTG)	 AG	1865-1968	GT	AGG
(ATC)	 AG	5582-5668	GT	AGG
(TGT)	 AG	5896-6048	GT	TGG
(GTG)	 AG	6159-6341	GT	CGG
(GTG)	 AG	6812-6934	GT	AGG
(GTG)	 AG	7064-7186	GT	AGG
-recovered Augustus_model.g39866.t1, internal, 211, 357
-recovered Augustus_model.g39866.t1, internal, 624, 732
-recovered Augustus_model.g39866.t1, internal, 1865, 1968
-recovered Augustus_model.g39866.t1, internal, 5582, 5668
-recovered Augustus_model.g39866.t1, internal, 5896, 6048
-recovered Augustus_model.g39866.t1, internal, 6159, 6341
-recovered Augustus_model.g39866.t1, internal, 6812, 6934
-recovered Augustus_model.g39866.t1, internal, 7064, 7186
Valid prediction for GlimmerHMM_glimmerT_60220-T1
Couldn't classify 211, 357
Couldn't classify 7064, 7186
Sorry, prediction snap_scaffold_335-snap.2-T1 fails validation.
(CTG)	 AG	211-357	GT	AGG
(ATC)	 AG	624-732	GT	AGG
(GTG)	 AG	1865-1968	GT	AGG
(ATC)	 AG	5582-5668	GT	AGG
(TGT)	 AG	5896-6048	GT	TGG
(GTG)	 AG	6159-6341	GT	CGG
(GTG)	 AG	6812-6934	GT	AGG
(GTG)	 AG	7064-7186	GT	AGG
-recovered snap_scaffold_335-snap.2-T1, internal, 211, 357
-recovered snap_scaffold_335-snap.2-T1, internal, 624, 732
-recovered snap_scaffold_335-snap.2-T1, internal, 1865, 1968
-recovered snap_scaffold_335-snap.2-T1, internal, 5582, 5668
-recovered snap_scaffold_335-snap.2-T1, internal, 5896, 6048
-recovered snap_scaffold_335-snap.2-T1, internal, 6159, 6341
-recovered snap_scaffold_335-snap.2-T1, internal, 6812, 6934
-recovered snap_scaffold_335-snap.2-T1, internal, 7064, 7186
Couldn't classify 7064, 7186
Sorry, prediction GlimmerHMM_glimmerT_60222-T1 fails validation.
(ATG)	 AC	6171-6341	GT	CGG
(GTG)	 AG	6812-6934	GT	AGG
(GTG)	 AG	7064-7186	GT	AGG
-recovered GlimmerHMM_glimmerT_60222-T1, initial, 6171, 6341
-recovered GlimmerHMM_glimmerT_60222-T1, internal, 6812, 6934
-recovered GlimmerHMM_glimmerT_60222-T1, internal, 7064, 7186
Valid prediction for GlimmerHMM_glimmerT_60221-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_335-snap.1-T1
Valid prediction for snap_scaffold_335-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7388, rend_intergenic: 211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8020
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7388, rend_intergenic: 211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support