-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_334

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_334-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60218-T1
Couldn't classify 5282, 5344
Sorry, prediction snap_scaffold_334-snap.2-T1 fails validation.
(ATG)	 AA	3903-3959	GT	AGG
(TGC)	 AG	4345-4542	GT	ACG
(ATA)	 AG	5282-5344	GT	CGG
-recovered snap_scaffold_334-snap.2-T1, initial, 3903, 3959
-recovered snap_scaffold_334-snap.2-T1, internal, 4345, 4542
-recovered snap_scaffold_334-snap.2-T1, internal, 5282, 5344

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60219-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60219-T1 372-622-terminal-1 is invalid.
Couldn't classify 354, 493
Sorry, prediction snap_scaffold_334-snap.3-T1 fails validation.
(GTT)	 AG	354-493	GT	GAG
(TGC)	 AG	1485-1651	CA	AGC
-recovered snap_scaffold_334-snap.3-T1, terminal, 1485, 1651
-recovered snap_scaffold_334-snap.3-T1, internal, 354, 493

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8025
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support