-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1, 83
Sorry, prediction GlimmerHMM_glimmerT_61839-T1 fails validation.
(AGT)	 GT	1-83	GT	CTG
(GCC)	 AG	564-749	CC	AAC
-recovered GlimmerHMM_glimmerT_61839-T1, terminal, 564, 749
Couldn't classify 57, 83
Couldn't classify 564, 737
Sorry, prediction snap_scaffold_3333-snap.1-T1 fails validation.
(CCC)	 AG	57-83	GT	CTG
(GCC)	 AG	564-737	GT	AGG
-recovered snap_scaffold_3333-snap.1-T1, internal, 57, 83
-recovered snap_scaffold_3333-snap.1-T1, internal, 564, 737
Couldn't classify 1, 83
Couldn't classify 564, 737
Sorry, prediction Augustus_model.g41128.t1 fails validation.
(AGT)	 GT	1-83	GT	CTG
(GCC)	 AG	564-737	GT	AGG
-recovered Augustus_model.g41128.t1, internal, 564, 737

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1032
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support