-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5984, 6192
Sorry, prediction snap_scaffold_333-snap.1-T1 fails validation.
(ATG)	 AA	2742-2923	GT	CGG
(GTG)	 AG	5984-6192	GT	ATG
-recovered snap_scaffold_333-snap.1-T1, initial, 2742, 2923
-recovered snap_scaffold_333-snap.1-T1, internal, 5984, 6192

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1338, 1429
Sorry, prediction GlimmerHMM_glimmerT_60217-T1 fails validation.
(GAC)	 AG	1338-1429	GT	CTG
(ATT)	 AG	1861-2053	GT	TGG
(ACA)	 AG	4608-4753	CG	GAC
-recovered GlimmerHMM_glimmerT_60217-T1, terminal, 4608, 4753
-recovered GlimmerHMM_glimmerT_60217-T1, internal, 1338, 1429
-recovered GlimmerHMM_glimmerT_60217-T1, internal, 1861, 2053
Valid prediction for Augustus_model.g39865.t1
Valid prediction for GlimmerHMM_glimmerT_60216-T1
Couldn't classify 1338, 1429
Sorry, prediction snap_scaffold_333-snap.2-T1 fails validation.
(GAC)	 AG	1338-1429	GT	CTG
(ATT)	 AG	1861-2016	GT	AGG
(CAT)	 AG	4650-4778	GA	GAG
-recovered snap_scaffold_333-snap.2-T1, terminal, 4650, 4778
-recovered snap_scaffold_333-snap.2-T1, internal, 1338, 1429
-recovered snap_scaffold_333-snap.2-T1, internal, 1861, 2016

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6192, rend_intergenic: 3256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8033
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6192, rend_intergenic: 3256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support