-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61837-T1
Couldn't classify 886, 1025
Sorry, prediction snap_scaffold_3320-snap.1-T1 fails validation.
(ATG)	 AG	17-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered snap_scaffold_3320-snap.1-T1, initial, 17, 155
-recovered snap_scaffold_3320-snap.1-T1, internal, 17, 155
-recovered snap_scaffold_3320-snap.1-T1, internal, 529, 621
-recovered snap_scaffold_3320-snap.1-T1, internal, 886, 1025
Couldn't classify 5, 155
Couldn't classify 886, 1025
Sorry, prediction pasa_asmbl_40987.p1 fails validation.
(TAC)	 AG	5-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered pasa_asmbl_40987.p1, internal, 5, 155
-recovered pasa_asmbl_40987.p1, internal, 529, 621
-recovered pasa_asmbl_40987.p1, internal, 886, 1025
Couldn't classify 1, 155
Couldn't classify 886, 1025
Sorry, prediction Augustus_model.g41126.t1 fails validation.
(TCA)	 CT	1-155	GT	CAG
(CTT)	 AG	529-621	GT	CTG
(CCT)	 AG	886-1025	GT	CAG
-recovered Augustus_model.g41126.t1, internal, 529, 621
-recovered Augustus_model.g41126.t1, internal, 886, 1025

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1034
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support