-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_332

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_332-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39864.t1
Couldn't classify 7764, 7829
Sorry, prediction snap_scaffold_332-snap.1-T1 fails validation.
(ATG)	 AG	3446-3613	GT	GAG
(AGC)	 AG	7172-7322	GT	GGG
(ATA)	 AG	7578-7630	GT	AGG
(ACC)	 AG	7764-7829	GT	AGG
-recovered snap_scaffold_332-snap.1-T1, initial, 3446, 3613
-recovered snap_scaffold_332-snap.1-T1, internal, 3446, 3613
-recovered snap_scaffold_332-snap.1-T1, internal, 7172, 7322
-recovered snap_scaffold_332-snap.1-T1, internal, 7578, 7630
-recovered snap_scaffold_332-snap.1-T1, internal, 7764, 7829
Valid prediction for Augustus_model.g39863.t1
Valid prediction for GlimmerHMM_glimmerT_60214-T1
Couldn't classify 109, 233
Sorry, prediction snap_scaffold_332-snap.3-T1 fails validation.
(CTA)	 AG	109-233	GT	AGG
(TGG)	 AG	749-928	GT	ATG
(ATC)	 AG	1236-1411	GT	CTG
(GTA)	 AG	2379-2406	GT	AGG
(ATA)	 AG	2694-2797	AC	GAA
-recovered snap_scaffold_332-snap.3-T1, terminal, 2694, 2797
-recovered snap_scaffold_332-snap.3-T1, internal, 109, 233
-recovered snap_scaffold_332-snap.3-T1, internal, 749, 928
-recovered snap_scaffold_332-snap.3-T1, internal, 1236, 1411
-recovered snap_scaffold_332-snap.3-T1, internal, 2379, 2406
Valid prediction for GlimmerHMM_glimmerT_60215-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4590, rend_intergenic: 2570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5477, rend_intergenic: 5239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8035
-exon list size: 23


building trellis

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36.0    
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84.0    
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92.0    
96.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4590, rend_intergenic: 2570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5477, rend_intergenic: 5239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support