-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_330

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39862.t1
Couldn't classify 303, 380
Sorry, prediction Augustus_model.g39861.t1 fails validation.
(GCC)	 AG	303-380	GT	ATG
(GTG)	 AG	3188-3302	GT	TGG
(CAA)	 AG	3536-3708	GT	AGG
(CAA)	 AG	3996-4074	CA	AGC
-recovered Augustus_model.g39861.t1, terminal, 3996, 4074
-recovered Augustus_model.g39861.t1, internal, 303, 380
-recovered Augustus_model.g39861.t1, internal, 3188, 3302
-recovered Augustus_model.g39861.t1, internal, 3536, 3708
Valid prediction for GlimmerHMM_glimmerT_60213-T1
Couldn't classify 303, 380
Sorry, prediction snap_scaffold_330-snap.1-T1 fails validation.
(GCC)	 AG	303-380	GT	ATG
(GTG)	 AG	3188-3302	GT	TGG
(CAA)	 AG	3536-3708	GT	AGG
(CAA)	 AG	3996-4056	GT	GTG
(AGC)	 AG	4856-5018	GT	AGG
(GAC)	 AG	6583-6698	GT	AGG
(GTT)	 AG	7263-7508	GT	GAG
-recovered snap_scaffold_330-snap.1-T1, terminal, 7263, 7508
-recovered snap_scaffold_330-snap.1-T1, internal, 303, 380
-recovered snap_scaffold_330-snap.1-T1, internal, 3188, 3302
-recovered snap_scaffold_330-snap.1-T1, internal, 3536, 3708
-recovered snap_scaffold_330-snap.1-T1, internal, 3996, 4056
-recovered snap_scaffold_330-snap.1-T1, internal, 4856, 5018
-recovered snap_scaffold_330-snap.1-T1, internal, 6583, 6698
-recovered snap_scaffold_330-snap.1-T1, internal, 7263, 7508

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_330-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7508, rend_intergenic: 622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8090
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7508, rend_intergenic: 622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support