-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_33

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_33-snap.2-T1
Valid prediction for Augustus_model.g39405.t1
Valid prediction for GlimmerHMM_glimmerT_59494-T1
Valid prediction for GlimmerHMM_glimmerT_59488-T1
Valid prediction for GlimmerHMM_glimmerT_59492-T1
Valid prediction for GlimmerHMM_glimmerT_59491-T1
Valid prediction for snap_scaffold_33-snap.5-T1
Valid prediction for Augustus_model.g39403.t1
Valid prediction for snap_scaffold_33-snap.4-T1
Valid prediction for Augustus_model.g39404.t1
Valid prediction for GlimmerHMM_glimmerT_59490-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59493-T1
Couldn't classify 40812, 41021
Sorry, prediction Augustus_model.g39402.t1 fails validation.
(ATG)	 AA	38904-39407	GT	TGG
(GAC)	 AG	39475-39648	GT	CGG
(TCT)	 AG	40812-41021		CT
-recovered Augustus_model.g39402.t1, initial, 38904, 39407
-recovered Augustus_model.g39402.t1, internal, 39475, 39648
Valid prediction for snap_scaffold_33-snap.3-T1
Valid prediction for snap_scaffold_33-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59489-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 41021
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support