-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3288

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 108, 223
Couldn't classify 631, 811
Sorry, prediction snap_scaffold_3288-snap.1-T1 fails validation.
(GAT)	 AG	108-223	GT	TGG
(TGG)	 AG	631-811	GT	AAG
-recovered snap_scaffold_3288-snap.1-T1, internal, 108, 223
-recovered snap_scaffold_3288-snap.1-T1, internal, 631, 811
Couldn't classify 106, 223
Couldn't classify 631, 812
Sorry, prediction pasa_asmbl_40980.p1 fails validation.
(AGG)	 CC	106-223	GT	TGG
(TGG)	 AG	631-812	TG	AGT
Valid prediction for GlimmerHMM_glimmerT_61832-T1
Couldn't classify 108, 223
Sorry, prediction Augustus_model.g41119.t1 fails validation.
(GAT)	 AG	108-223	GT	TGG
(TGG)	 AG	631-815	GC	GAG
-recovered Augustus_model.g41119.t1, terminal, 631, 815
-recovered Augustus_model.g41119.t1, internal, 108, 223
-recovered Augustus_model.g41119.t1, internal, 631, 815

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 8


building trellis

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50.0    
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90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support