-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3287

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 74, 455
Couldn't classify 464, 837
Sorry, prediction snap_scaffold_3287-snap.1-T1 fails validation.
(GTG)	 AG	74-455	GT	CAG
(GCC)	 AG	464-837	GT	ATG
-recovered snap_scaffold_3287-snap.1-T1, internal, 74, 455
-recovered snap_scaffold_3287-snap.1-T1, internal, 464, 837
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g41118.t1
add_exon() Sorry, Augustus_model.g41118.t1 74-552-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61831-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1038
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support