-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_327

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3380, 3582
Sorry, prediction snap_scaffold_327-snap.2-T1 fails validation.
(GTG)	 AG	3380-3582	GT	TGG
(GAC)	 AG	4495-4733	GT	GGG
(TCT)	 AG	5149-5398	TG	AGT
-recovered snap_scaffold_327-snap.2-T1, terminal, 5149, 5398
-recovered snap_scaffold_327-snap.2-T1, internal, 3380, 3582
-recovered snap_scaffold_327-snap.2-T1, internal, 4495, 4733
Couldn't classify 7596, 7799
Sorry, prediction snap_scaffold_327-snap.3-T1 fails validation.
(ATG)	 GC	6261-6335	GT	AAG
(CTC)	 AG	7596-7799	GT	TGG
-recovered snap_scaffold_327-snap.3-T1, initial, 6261, 6335
-recovered snap_scaffold_327-snap.3-T1, internal, 7596, 7799

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2728, 2916
Sorry, prediction pasa_asmbl_40978.p1 fails validation.
(GTG)	 AG	2728-2916	GT	AGG
(GTG)	 AG	3072-3167	GT	ACG
(GGA)	 AG	3409-3652	GT	AGG
(CTG)	 AG	4560-4635	GT	AGG
(GTC)	 AG	7516-7630	GC	GAG
-recovered pasa_asmbl_40978.p1, terminal, 7516, 7630
-recovered pasa_asmbl_40978.p1, internal, 2728, 2916
-recovered pasa_asmbl_40978.p1, internal, 3072, 3167
-recovered pasa_asmbl_40978.p1, internal, 3409, 3652
-recovered pasa_asmbl_40978.p1, internal, 4560, 4635
-recovered pasa_asmbl_40978.p1, internal, 7516, 7630
Valid prediction for Augustus_model.g39860.t1
Valid prediction for GlimmerHMM_glimmerT_60210-T1
Couldn't classify 8034, 8102
Sorry, prediction Augustus_model.g39859.t1 fails validation.
(ATG)	 AC	7593-7641	GT	AGG
(AAA)	 AG	8034-8102	GT	GGG
-recovered Augustus_model.g39859.t1, initial, 7593, 7641
-recovered Augustus_model.g39859.t1, internal, 8034, 8102
Couldn't classify 321, 413
Couldn't classify 8034, 8102
Sorry, prediction snap_scaffold_327-snap.1-T1 fails validation.
(ACC)	 AG	321-413	GT	TGG
(CAC)	 AG	510-596	GT	AGG
(CTA)	 AG	1776-1829	GT	TGG
(GTG)	 AG	2728-2916	GT	AGG
(GTG)	 AG	3072-3167	GT	ACG
(GGA)	 AG	3409-3652	GT	AGG
(CTG)	 AG	4560-4688	GT	TGG
(GTC)	 AG	7516-7641	GT	AGG
(AAA)	 AG	8034-8102	GT	GGG
-recovered snap_scaffold_327-snap.1-T1, internal, 321, 413
-recovered snap_scaffold_327-snap.1-T1, internal, 510, 596
-recovered snap_scaffold_327-snap.1-T1, internal, 1776, 1829
-recovered snap_scaffold_327-snap.1-T1, internal, 2728, 2916
-recovered snap_scaffold_327-snap.1-T1, internal, 3072, 3167
-recovered snap_scaffold_327-snap.1-T1, internal, 3409, 3652
-recovered snap_scaffold_327-snap.1-T1, internal, 4560, 4688
-recovered snap_scaffold_327-snap.1-T1, internal, 7516, 7641
-recovered snap_scaffold_327-snap.1-T1, internal, 8034, 8102

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 3380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8121
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 3380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support