-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_326

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_46525-T1
Couldn't classify 5178, 5273
Couldn't classify 7841, 8077
Sorry, prediction snap_scaffold_326-snap.2-T1 fails validation.
(CGG)	 AG	5178-5273	GT	GAG
(GGT)	 AG	5913-5976	GT	CAG
(ACA)	 AG	6445-6486	GT	AGG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-8077	GT	TGG
-recovered snap_scaffold_326-snap.2-T1, internal, 5178, 5273
-recovered snap_scaffold_326-snap.2-T1, internal, 5913, 5976
-recovered snap_scaffold_326-snap.2-T1, internal, 6445, 6486
-recovered snap_scaffold_326-snap.2-T1, internal, 7274, 7408
-recovered snap_scaffold_326-snap.2-T1, internal, 7841, 8077
Couldn't classify 7841, 7960
Sorry, prediction GlimmerHMM_glimmerT_60209-T1 fails validation.
(ATG)	 CT	5004-5018	GT	AGG
(CGG)	 AG	5178-5273	GT	GAG
(ACC)	 AG	5793-5976	GT	CAG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-7960	GT	TGG
-recovered GlimmerHMM_glimmerT_60209-T1, initial, 5004, 5018
-recovered GlimmerHMM_glimmerT_60209-T1, internal, 5178, 5273
-recovered GlimmerHMM_glimmerT_60209-T1, internal, 5793, 5976
-recovered GlimmerHMM_glimmerT_60209-T1, internal, 7274, 7408
-recovered GlimmerHMM_glimmerT_60209-T1, internal, 7841, 7960
Couldn't classify 7841, 7960
Sorry, prediction Augustus_model.g39858.t1 fails validation.
(ATG)	 CT	5004-5018	GT	AGG
(CGG)	 AG	5178-5273	GT	GAG
(GGT)	 AG	5913-5976	GT	CAG
(TCT)	 AG	7274-7408	GT	ACG
(GCC)	 AG	7841-7960	GT	TGG
-recovered Augustus_model.g39858.t1, initial, 5004, 5018
-recovered Augustus_model.g39858.t1, internal, 5178, 5273
-recovered Augustus_model.g39858.t1, internal, 5913, 5976
-recovered Augustus_model.g39858.t1, internal, 7274, 7408
-recovered Augustus_model.g39858.t1, internal, 7841, 7960

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60208-T1
Valid prediction for snap_scaffold_326-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8121
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support