-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_324

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_324-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60203-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39855.t1
add_exon() Sorry, Augustus_model.g39855.t1 249-514-terminal-1 is invalid.
Valid prediction for Augustus_model.g39854.t1
Couldn't classify 249, 510
Sorry, prediction snap_scaffold_324-snap.1-T1 fails validation.
(TGG)	 AG	249-510	GT	AGG
(GTT)	 AG	3890-3967	GT	GAG
(GAG)	 AG	7779-7824	GT	GAG
add_exon() Sorry, snap_scaffold_324-snap.1-T1 249-510-terminal-3 is invalid.
-recovered snap_scaffold_324-snap.1-T1, terminal, 249, 510
-recovered snap_scaffold_324-snap.1-T1, terminal, 7779, 7824
-recovered snap_scaffold_324-snap.1-T1, internal, 249, 510
-recovered snap_scaffold_324-snap.1-T1, internal, 3890, 3967
-recovered snap_scaffold_324-snap.1-T1, internal, 7779, 7824
Valid prediction for GlimmerHMM_glimmerT_60202-T1
Couldn't classify 249, 510
Sorry, prediction GlimmerHMM_glimmerT_60204-T1 fails validation.
(TGG)	 AG	249-510	GT	AGG
(TAG)	 AG	599-626	CA	GAC
add_exon() Sorry, GlimmerHMM_glimmerT_60204-T1 249-510-terminal-3 is invalid.
-recovered GlimmerHMM_glimmerT_60204-T1, terminal, 249, 510
-recovered GlimmerHMM_glimmerT_60204-T1, terminal, 599, 626
-recovered GlimmerHMM_glimmerT_60204-T1, internal, 249, 510

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7882, rend_intergenic: 2338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8130
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7882, rend_intergenic: 2338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support