-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3217

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 643, 754
Couldn't classify 853, 958
Sorry, prediction Augustus_model.g41101.t1 fails validation.
(CTC)	 AG	643-754	GT	GGG
(AGA)	 AG	853-958	GT	AGG
-recovered Augustus_model.g41101.t1, internal, 643, 754
-recovered Augustus_model.g41101.t1, internal, 853, 958
Couldn't classify 643, 754
Couldn't classify 853, 958
Sorry, prediction snap_scaffold_3217-snap.1-T1 fails validation.
(CTC)	 AG	643-754	GT	GGG
(AGA)	 AG	853-958	GT	AGG
-recovered snap_scaffold_3217-snap.1-T1, internal, 643, 754
-recovered snap_scaffold_3217-snap.1-T1, internal, 853, 958
Couldn't classify 643, 754
Sorry, prediction GlimmerHMM_glimmerT_61815-T1 fails validation.
(CTC)	 AG	643-754	GT	GGG
(AGA)	 AG	853-962	AG	AGA
-recovered GlimmerHMM_glimmerT_61815-T1, terminal, 853, 962
-recovered GlimmerHMM_glimmerT_61815-T1, internal, 643, 754

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1048
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support