-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_320-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60193-T1
Valid prediction for Augustus_model.g39848.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7523, 7752
Sorry, prediction Augustus_model.g39847.t1 fails validation.
(ATG)	 GC	6563-6590	GT	ATG
(GTG)	 AG	6751-6900	GT	AGG
(GTT)	 AG	7230-7328	GT	AGG
(GTC)	 AG	7523-7752	GT	AGG
-recovered Augustus_model.g39847.t1, initial, 6563, 6590
-recovered Augustus_model.g39847.t1, internal, 6751, 6900
-recovered Augustus_model.g39847.t1, internal, 7230, 7328
-recovered Augustus_model.g39847.t1, internal, 7523, 7752
Valid prediction for snap_scaffold_320-snap.1-T1
Valid prediction for snap_scaffold_320-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60192-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7032, rend_intergenic: 684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8172
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7032, rend_intergenic: 684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support