-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_32 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59487-T1 Valid prediction for Augustus_model.g39399.t1 Valid prediction for snap_scaffold_32-snap.4-T1 Valid prediction for Augustus_model.g39397.t1 Valid prediction for GlimmerHMM_glimmerT_59486-T1 Valid prediction for Augustus_model.g39400.t1 Valid prediction for snap_scaffold_32-snap.5-T1 Couldn't classify 47472, 47587 Sorry, prediction Augustus_model.g39401.t1 fails validation. (ATG) AT 41575-41578 GT GGG (GTG) AG 42710-42868 GT AGG (GTC) AG 43301-43389 GT GGG (ATC) AG 43668-43864 GT AGG (TGT) AG 44714-44834 GT AGG (GTG) AG 45219-45306 GT CGG (GTG) AG 45577-45611 GT AGG (AGG) AG 45707-45866 GT GGG (GGT) AG 46799-46987 GT AGG (TGC) AG 47472-47587 GT ATG -recovered Augustus_model.g39401.t1, initial, 41575, 41578 add_exon() Sorry, Augustus_model.g39401.t1 46799-46987-terminal-1 is invalid. -recovered Augustus_model.g39401.t1, terminal, 46799, 46987 -recovered Augustus_model.g39401.t1, internal, 42710, 42868 -recovered Augustus_model.g39401.t1, internal, 43301, 43389 -recovered Augustus_model.g39401.t1, internal, 43668, 43864 -recovered Augustus_model.g39401.t1, internal, 44714, 44834 -recovered Augustus_model.g39401.t1, internal, 45219, 45306 -recovered Augustus_model.g39401.t1, internal, 45577, 45611 -recovered Augustus_model.g39401.t1, internal, 45707, 45866 -recovered Augustus_model.g39401.t1, internal, 46799, 46987 -recovered Augustus_model.g39401.t1, internal, 47472, 47587 Couldn't classify 47472, 47587 Sorry, prediction snap_scaffold_32-snap.8-T1 fails validation. (ATG) AT 41575-41578 GT GGG (GTG) AG 42710-42868 GT AGG (GTC) AG 43301-43389 GT GGG (ATC) AG 43668-43864 GT AGG (TGT) AG 44714-44834 GT AGG (GTG) AG 45219-45306 GT CGG (GTG) AG 45577-45611 GT AGG (AGG) AG 45707-45866 GT GGG (GGT) AG 46799-46987 GT AGG (TGC) AG 47472-47587 GT ATG -recovered snap_scaffold_32-snap.8-T1, initial, 41575, 41578 add_exon() Sorry, snap_scaffold_32-snap.8-T1 46799-46987-terminal-1 is invalid. -recovered snap_scaffold_32-snap.8-T1, terminal, 46799, 46987 -recovered snap_scaffold_32-snap.8-T1, internal, 42710, 42868 -recovered snap_scaffold_32-snap.8-T1, internal, 43301, 43389 -recovered snap_scaffold_32-snap.8-T1, internal, 43668, 43864 -recovered snap_scaffold_32-snap.8-T1, internal, 44714, 44834 -recovered snap_scaffold_32-snap.8-T1, internal, 45219, 45306 -recovered snap_scaffold_32-snap.8-T1, internal, 45577, 45611 -recovered snap_scaffold_32-snap.8-T1, internal, 45707, 45866 -recovered snap_scaffold_32-snap.8-T1, internal, 46799, 46987 -recovered snap_scaffold_32-snap.8-T1, internal, 47472, 47587 Valid prediction for snap_scaffold_32-snap.7-T1 Valid prediction for snap_scaffold_32-snap.2-T1 Valid prediction for snap_scaffold_32-snap.6-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39398.t1 Valid prediction for GlimmerHMM_glimmerT_59483-T1 Valid prediction for GlimmerHMM_glimmerT_59484-T1 Couldn't classify 36630, 36730 Couldn't classify 38147, 38235 Sorry, prediction pasa_asmbl_40953.p1 fails validation. (GCA) AA 36630-36730 GT AGG (CCG) AG 36968-37089 GT CGG (CCA) AG 37774-37860 GT TGG (GCC) AG 38147-38235 GG CAG -recovered pasa_asmbl_40953.p1, internal, 36968, 37089 -recovered pasa_asmbl_40953.p1, internal, 37774, 37860 Couldn't classify 46042, 46388 Sorry, prediction snap_scaffold_32-snap.1-T1 fails validation. (ATG) GC 43455-43498 GT ACG (GCA) AG 46042-46388 GT GGG -recovered snap_scaffold_32-snap.1-T1, initial, 43455, 43498 -recovered snap_scaffold_32-snap.1-T1, internal, 46042, 46388 Couldn't classify 694, 1575 Sorry, prediction snap_scaffold_32-snap.9-T1 fails validation. (GAT) AG 694-1575 GT CTG (GGA) AG 3725-4042 TT GAT -recovered snap_scaffold_32-snap.9-T1, terminal, 3725, 4042 -recovered snap_scaffold_32-snap.9-T1, internal, 694, 1575 Valid prediction for GlimmerHMM_glimmerT_59485-T1 Valid prediction for snap_scaffold_32-snap.3-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12010, rend_intergenic: 4845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47587, rend_intergenic: 43599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 47640 -exon list size: 81 building trellis 1.2 2.4 3.6 4.8 6.0 7.2 8.4 9.6 10.8 12.0 13.3 14.5 15.7 16.9 18.1 19.3 20.5 21.7 22.9 24.1 25.3 26.5 27.7 28.9 30.1 31.3 32.5 33.7 34.9 36.1 37.3 38.6 39.8 41.0 42.2 43.4 44.6 45.8 47.0 48.2 49.4 50.6 51.8 53.0 54.2 55.4 56.6 57.8 59.0 60.2 61.4 62.7 63.9 65.1 66.3 67.5 68.7 69.9 71.1 72.3 73.5 74.7 75.9 77.1 78.3 79.5 80.7 81.9 83.1 84.3 85.5 86.7 88.0 89.2 90.4 91.6 92.8 94.0 95.2 96.4 97.6 98.8 -found 6 predictions from path traversal Error with prediction: snap lend_intergenic: 12010, rend_intergenic: 4845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47587, rend_intergenic: 43599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 5 predictions persist after filtering for low support