-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 188, 332
Couldn't classify 741, 823
Sorry, prediction Augustus_model.g41095.t1 fails validation.
(CCA)	 AG	188-332	GT	AGG
(GCC)	 AG	499-645	GT	AGG
(CCA)	 AG	741-823	GT	AGG
-recovered Augustus_model.g41095.t1, internal, 188, 332
-recovered Augustus_model.g41095.t1, internal, 499, 645
-recovered Augustus_model.g41095.t1, internal, 741, 823
Couldn't classify 188, 340
Sorry, prediction GlimmerHMM_glimmerT_61808-T1 fails validation.
(CCA)	 AG	188-340	GT	AAG
(GCC)	 AG	499-520	TG	AGT
-recovered GlimmerHMM_glimmerT_61808-T1, terminal, 499, 520
-recovered GlimmerHMM_glimmerT_61808-T1, internal, 188, 340
Couldn't classify 223, 332
Couldn't classify 741, 823
Sorry, prediction snap_scaffold_3195-snap.1-T1 fails validation.
(ACC)	 AG	223-332	GT	AGG
(CCA)	 AG	741-823	GT	AGG
-recovered snap_scaffold_3195-snap.1-T1, internal, 223, 332
-recovered snap_scaffold_3195-snap.1-T1, internal, 741, 823

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1052
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support