-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_319

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_319-snap.1-T1
add_exon() Sorry, snap_scaffold_319-snap.1-T1 364-690-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_319-snap.1-T1 1214-1368-terminal-1 is invalid.
Valid prediction for Augustus_model.g39846.t1
Couldn't classify 5096, 5395
Sorry, prediction pasa_asmbl_40948.p1 fails validation.
(CAT)	 AG	5096-5395	GC	CCG
-recovered pasa_asmbl_40948.p1, internal, 5096, 5395
Valid prediction for GlimmerHMM_glimmerT_60191-T1
Valid prediction for snap_scaffold_319-snap.2-T1
Valid prediction for Augustus_model.g39845.t1
add_exon() Sorry, Augustus_model.g39845.t1 364-621-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g39845.t1 1214-1368-terminal-1 is invalid.
Valid prediction for snap_scaffold_319-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60190-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8180
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support