-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 223, 367
Couldn't classify 855, 960
Sorry, prediction Augustus_model.g41093.t1 fails validation.
(ACA)	 AG	223-367	GT	AGG
(GGA)	 AG	855-960	GT	AGG
-recovered Augustus_model.g41093.t1, internal, 223, 367
-recovered Augustus_model.g41093.t1, internal, 855, 960
Valid prediction for CodingQuarry_transcript_46512-T1
Couldn't classify 227, 367
Couldn't classify 855, 960
Sorry, prediction snap_scaffold_3183-snap.1-T1 fails validation.
(GTG)	 AG	227-367	GT	AGG
(GGA)	 AG	855-960	GT	AGG
-recovered snap_scaffold_3183-snap.1-T1, internal, 227, 367
-recovered snap_scaffold_3183-snap.1-T1, internal, 855, 960
Couldn't classify 223, 367
Sorry, prediction GlimmerHMM_glimmerT_61806-T1 fails validation.
(ACA)	 AG	223-367	GT	AGG
(GGA)	 AG	855-998	GT	GAG
-recovered GlimmerHMM_glimmerT_61806-T1, terminal, 855, 998
-recovered GlimmerHMM_glimmerT_61806-T1, internal, 223, 367
-recovered GlimmerHMM_glimmerT_61806-T1, internal, 855, 998

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1054
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support