-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_318

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4398, 4461
Sorry, prediction snap_scaffold_318-snap.3-T1 fails validation.
(GAG)	 AG	4398-4461	GT	TTG
(ACA)	 AG	5430-5531	GT	AGG
(TCG)	 AG	6472-6555	GT	CAG
(TCT)	 AG	8071-8159	AC	GAA
-recovered snap_scaffold_318-snap.3-T1, terminal, 8071, 8159
-recovered snap_scaffold_318-snap.3-T1, internal, 4398, 4461
-recovered snap_scaffold_318-snap.3-T1, internal, 5430, 5531
-recovered snap_scaffold_318-snap.3-T1, internal, 6472, 6555

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1090, 1176
Sorry, prediction snap_scaffold_318-snap.2-T1 fails validation.
(GTG)	 AG	1090-1176	GT	CAG
(CGA)	 AG	1685-1857	GT	AAG
(AAA)	 AG	3795-4136	GT	CCG
(AGC)	 AG	4256-4405	GT	AGG
(ACC)	 AG	5411-5510	GT	GAG
-recovered snap_scaffold_318-snap.2-T1, terminal, 5411, 5510
-recovered snap_scaffold_318-snap.2-T1, internal, 1090, 1176
-recovered snap_scaffold_318-snap.2-T1, internal, 1685, 1857
-recovered snap_scaffold_318-snap.2-T1, internal, 3795, 4136
-recovered snap_scaffold_318-snap.2-T1, internal, 4256, 4405
-recovered snap_scaffold_318-snap.2-T1, internal, 5411, 5510
Couldn't classify 6067, 6142
Sorry, prediction snap_scaffold_318-snap.1-T1 fails validation.
(ATG)	 AC	5592-5802	GT	AGG
(CTC)	 AG	6067-6142	GT	TGG
-recovered snap_scaffold_318-snap.1-T1, initial, 5592, 5802
-recovered snap_scaffold_318-snap.1-T1, internal, 6067, 6142
Couldn't classify 1090, 1176
Sorry, prediction GlimmerHMM_glimmerT_60189-T1 fails validation.
(GTG)	 AG	1090-1176	GT	CAG
(CGA)	 AG	1685-1865	GT	ATG
(CCA)	 AG	3791-4188	GG	GAG
-recovered GlimmerHMM_glimmerT_60189-T1, terminal, 3791, 4188
-recovered GlimmerHMM_glimmerT_60189-T1, internal, 1090, 1176
-recovered GlimmerHMM_glimmerT_60189-T1, internal, 1685, 1865

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7093, rend_intergenic: 4398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8182
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7093, rend_intergenic: 4398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support