-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3174

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 105, 195
Sorry, prediction GlimmerHMM_glimmerT_61802-T1 fails validation.
(GTT)	 AG	105-195	GT	GGG
(TCG)	 AG	412-481	GT	GGG
(AGA)	 AG	808-962	GG	GAG
-recovered GlimmerHMM_glimmerT_61802-T1, terminal, 808, 962
-recovered GlimmerHMM_glimmerT_61802-T1, internal, 105, 195
-recovered GlimmerHMM_glimmerT_61802-T1, internal, 412, 481
Couldn't classify 105, 195
Couldn't classify 808, 947
Sorry, prediction snap_scaffold_3174-snap.1-T1 fails validation.
(GTT)	 AG	105-195	GT	GGG
(TCG)	 AG	412-481	GT	GGG
(AGA)	 AG	808-947	GT	AGG
-recovered snap_scaffold_3174-snap.1-T1, internal, 105, 195
-recovered snap_scaffold_3174-snap.1-T1, internal, 412, 481
-recovered snap_scaffold_3174-snap.1-T1, internal, 808, 947
Couldn't classify 105, 195
Sorry, prediction Augustus_model.g41091.t1 fails validation.
(GTT)	 AG	105-195	GT	GGG
(TCG)	 AG	412-481	GT	GGG
(AGA)	 AG	808-962	GG	GAG
-recovered Augustus_model.g41091.t1, terminal, 808, 962
-recovered Augustus_model.g41091.t1, internal, 105, 195
-recovered Augustus_model.g41091.t1, internal, 412, 481

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1056
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support