-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_316

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 494, 617
Sorry, prediction snap_scaffold_316-snap.1-T1 fails validation.
(GTA)	 AG	494-617	GT	GGG
(TCA)	 AG	3512-3674	CT	GAC
-recovered snap_scaffold_316-snap.1-T1, terminal, 3512, 3674
-recovered snap_scaffold_316-snap.1-T1, internal, 494, 617
Valid prediction for snap_scaffold_316-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 288, 408
Couldn't classify 7657, 7754
Sorry, prediction Augustus_model.g39844.t1 fails validation.
(GTC)	 AG	288-408	GT	TGG
(GGG)	 AG	801-898	GT	AGG
(GAA)	 AG	1276-1381	GT	AGG
(GTT)	 AG	2632-2674	GT	GAG
(TAT)	 AG	2899-2989	GT	GAG
(GCA)	 AG	3576-3581	GT	CAG
(AAC)	 AG	4472-4584	GT	GGG
(CCA)	 AG	4995-5070	GT	AGG
(GGA)	 AG	7657-7754	GT	AGG
-recovered Augustus_model.g39844.t1, terminal, 801, 898
-recovered Augustus_model.g39844.t1, internal, 288, 408
-recovered Augustus_model.g39844.t1, internal, 801, 898
-recovered Augustus_model.g39844.t1, internal, 1276, 1381
-recovered Augustus_model.g39844.t1, internal, 2632, 2674
-recovered Augustus_model.g39844.t1, internal, 2899, 2989
-recovered Augustus_model.g39844.t1, internal, 3576, 3581
-recovered Augustus_model.g39844.t1, internal, 4472, 4584
-recovered Augustus_model.g39844.t1, internal, 4995, 5070
-recovered Augustus_model.g39844.t1, internal, 7657, 7754
Couldn't classify 288, 408
Couldn't classify 7657, 7754
Sorry, prediction snap_scaffold_316-snap.2-T1 fails validation.
(GTC)	 AG	288-408	GT	TGG
(GGG)	 AG	801-898	GT	AGG
(GAA)	 AG	1276-1381	GT	AGG
(GTT)	 AG	2632-2674	GT	GAG
(TAT)	 AG	2899-2989	GT	GAG
(AAC)	 AG	4472-4557	GT	CCG
(GAC)	 AG	4721-4793	GT	AAG
(GGA)	 AG	7657-7754	GT	AGG
-recovered snap_scaffold_316-snap.2-T1, terminal, 801, 898
-recovered snap_scaffold_316-snap.2-T1, internal, 288, 408
-recovered snap_scaffold_316-snap.2-T1, internal, 801, 898
-recovered snap_scaffold_316-snap.2-T1, internal, 1276, 1381
-recovered snap_scaffold_316-snap.2-T1, internal, 2632, 2674
-recovered snap_scaffold_316-snap.2-T1, internal, 2899, 2989
-recovered snap_scaffold_316-snap.2-T1, internal, 4472, 4557
-recovered snap_scaffold_316-snap.2-T1, internal, 4721, 4793
-recovered snap_scaffold_316-snap.2-T1, internal, 7657, 7754
Couldn't classify 173, 408
Couldn't classify 1276, 1355
Sorry, prediction pasa_asmbl_40939.p1 fails validation.
(GTC)	 GT	173-408	GT	TGG
(GGG)	 AG	801-898	GT	AGG
(GAA)	 AG	1276-1355	CA	CCC
-recovered pasa_asmbl_40939.p1, terminal, 801, 898
-recovered pasa_asmbl_40939.p1, internal, 801, 898
Couldn't classify 288, 408
Sorry, prediction GlimmerHMM_glimmerT_60187-T1 fails validation.
(GTC)	 AG	288-408	GT	TGG
(GGG)	 AG	801-898	GT	AGG
(GAA)	 AG	1276-1381	GT	AGG
(GTT)	 AG	2632-2674	GT	GAG
(TAT)	 AG	2899-2989	GT	GAG
(GGA)	 AG	7657-7931	AG	AAA
-recovered GlimmerHMM_glimmerT_60187-T1, terminal, 801, 898
-recovered GlimmerHMM_glimmerT_60187-T1, terminal, 7657, 7931
-recovered GlimmerHMM_glimmerT_60187-T1, internal, 288, 408
-recovered GlimmerHMM_glimmerT_60187-T1, internal, 801, 898
-recovered GlimmerHMM_glimmerT_60187-T1, internal, 1276, 1381
-recovered GlimmerHMM_glimmerT_60187-T1, internal, 2632, 2674
-recovered GlimmerHMM_glimmerT_60187-T1, internal, 2899, 2989

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3674, rend_intergenic: 498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 4008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8251
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3674, rend_intergenic: 498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7964, rend_intergenic: 4008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support