-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3149

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 114, 274
Couldn't classify 352, 907
Sorry, prediction snap_scaffold_3149-snap.1-T1 fails validation.
(ATA)	 AG	114-274	GT	AGG
(GTG)	 AG	352-907	GT	ATG
-recovered snap_scaffold_3149-snap.1-T1, internal, 114, 274
-recovered snap_scaffold_3149-snap.1-T1, internal, 352, 907
Couldn't classify 114, 274
Couldn't classify 352, 465
Sorry, prediction Augustus_model.g41084.t1 fails validation.
(ATA)	 AG	114-274	GT	AGG
(GTG)	 AG	352-465	GT	TTG
-recovered Augustus_model.g41084.t1, internal, 114, 274
-recovered Augustus_model.g41084.t1, internal, 352, 465
Valid prediction for GlimmerHMM_glimmerT_61793-T1
Valid prediction for GlimmerHMM_glimmerT_61794-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61794-T1 114-292-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1061
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support