-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_314

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_314-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60184-T1
Valid prediction for GlimmerHMM_glimmerT_60183-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 212, 361
Sorry, prediction snap_scaffold_314-snap.2-T1 fails validation.
(CGC)	 AG	212-361	GT	CTG
(GGG)	 AG	1387-1536	GT	TGG
(ATG)	 AG	7247-7285	CA	GAC
-recovered snap_scaffold_314-snap.2-T1, terminal, 7247, 7285
-recovered snap_scaffold_314-snap.2-T1, internal, 212, 361
-recovered snap_scaffold_314-snap.2-T1, internal, 1387, 1536
Couldn't classify 8064, 8195
Sorry, prediction snap_scaffold_314-snap.1-T1 fails validation.
(ATG)	 AC	7940-8003	GT	AGG
(CTC)	 AG	8064-8195	GT	GGG
-recovered snap_scaffold_314-snap.1-T1, initial, 7940, 8003
-recovered snap_scaffold_314-snap.1-T1, internal, 8064, 8195
Valid prediction for GlimmerHMM_glimmerT_60185-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8047, rend_intergenic: 2145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8258
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8047, rend_intergenic: 2145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support