-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_313

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60182-T1
Valid prediction for GlimmerHMM_glimmerT_60181-T1
Couldn't classify 1179, 1290
Sorry, prediction Augustus_model.g39843.t1 fails validation.
(TAT)	 AG	1179-1290	GT	AGG
(GTG)	 AG	1969-2076	GT	AGG
(AGC)	 AG	2497-2657	GT	AGG
(GTC)	 AG	2851-2932	GT	AGG
(TGG)	 AG	3413-3571	GT	AGG
(GAT)	 AG	3742-3888	GT	AGG
(CTG)	 AG	3991-4083	GT	AGG
(GGC)	 AG	4258-4372	GT	GGG
(GTA)	 AG	4636-4838	GT	GGG
(GTG)	 AG	5223-5438	GG	AGG
-recovered Augustus_model.g39843.t1, terminal, 5223, 5438
-recovered Augustus_model.g39843.t1, internal, 1179, 1290
-recovered Augustus_model.g39843.t1, internal, 1969, 2076
-recovered Augustus_model.g39843.t1, internal, 2497, 2657
-recovered Augustus_model.g39843.t1, internal, 2851, 2932
-recovered Augustus_model.g39843.t1, internal, 3413, 3571
-recovered Augustus_model.g39843.t1, internal, 3742, 3888
-recovered Augustus_model.g39843.t1, internal, 3991, 4083
-recovered Augustus_model.g39843.t1, internal, 4258, 4372
-recovered Augustus_model.g39843.t1, internal, 4636, 4838
Valid prediction for snap_scaffold_313-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8258
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support