-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_312

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8052, 8261
Sorry, prediction snap_scaffold_312-snap.2-T1 fails validation.
(ATG)	 GG	4827-5027	GT	AGG
(AAG)	 AG	8052-8261	GT	GGG
-recovered snap_scaffold_312-snap.2-T1, initial, 4827, 5027
-recovered snap_scaffold_312-snap.2-T1, internal, 8052, 8261
Valid prediction for GlimmerHMM_glimmerT_60179-T1
Valid prediction for Augustus_model.g39842.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60178-T1
Couldn't classify 124, 332
Sorry, prediction GlimmerHMM_glimmerT_60180-T1 fails validation.
(GGC)	 AG	124-332	GT	ACG
(ACA)	 AG	2106-2284	GT	GCG
(CTC)	 AG	2765-2840	GT	GAG
(CCT)	 AG	2922-2980	GG	GAG
-recovered GlimmerHMM_glimmerT_60180-T1, terminal, 2922, 2980
-recovered GlimmerHMM_glimmerT_60180-T1, internal, 124, 332
-recovered GlimmerHMM_glimmerT_60180-T1, internal, 2106, 2284
-recovered GlimmerHMM_glimmerT_60180-T1, internal, 2765, 2840
Valid prediction for snap_scaffold_312-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 4827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8264
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 4827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support