-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_311

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1275, 1305
Couldn't classify 4874, 5015
Sorry, prediction snap_scaffold_311-snap.1-T1 fails validation.
(ACG)	 AG	1275-1305	GT	TGG
(GCC)	 AG	1770-1854	GT	AAG
(AAC)	 AG	4874-5015	GT	AGG
-recovered snap_scaffold_311-snap.1-T1, internal, 1275, 1305
-recovered snap_scaffold_311-snap.1-T1, internal, 1770, 1854
-recovered snap_scaffold_311-snap.1-T1, internal, 4874, 5015

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4095, 4166
Sorry, prediction GlimmerHMM_glimmerT_60177-T1 fails validation.
(GGC)	 AG	4095-4166	GT	TGG
(TTT)	 AG	6446-6552	GA	AGG
-recovered GlimmerHMM_glimmerT_60177-T1, terminal, 6446, 6552
-recovered GlimmerHMM_glimmerT_60177-T1, internal, 4095, 4166
Couldn't classify 3309, 3404
Sorry, prediction snap_scaffold_311-snap.2-T1 fails validation.
(GTT)	 AG	3309-3404	GT	TGG
(GCT)	 AG	3473-3663	GT	GAG
(TTT)	 AG	6446-6596	CT	AGC
-recovered snap_scaffold_311-snap.2-T1, terminal, 6446, 6596
-recovered snap_scaffold_311-snap.2-T1, internal, 3309, 3404
-recovered snap_scaffold_311-snap.2-T1, internal, 3473, 3663

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5015, rend_intergenic: 1690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8285
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5015, rend_intergenic: 1690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support