-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61779-T1
Couldn't classify 55, 188
Couldn't classify 406, 496
Sorry, prediction snap_scaffold_3100-snap.1-T1 fails validation.
(ATC)	 AG	55-188	GT	TGG
(GCA)	 AG	406-496	GT	AGG
-recovered snap_scaffold_3100-snap.1-T1, internal, 55, 188
-recovered snap_scaffold_3100-snap.1-T1, internal, 406, 496
Valid prediction for HiQ_model.g41074.t1
Valid prediction for CodingQuarry_transcript_46507-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1068
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support