-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_310

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60175-T1
Valid prediction for snap_scaffold_310-snap.3-T1
Valid prediction for Augustus_model.g39841.t1
Valid prediction for GlimmerHMM_glimmerT_60174-T1
Couldn't classify 224, 421
Sorry, prediction snap_scaffold_310-snap.2-T1 fails validation.
(GGC)	 AG	224-421	GT	TGG
(GGG)	 AG	436-545	GT	AGG
(AGC)	 AG	1443-1574	CA	AAC
-recovered snap_scaffold_310-snap.2-T1, terminal, 1443, 1574
-recovered snap_scaffold_310-snap.2-T1, internal, 224, 421
-recovered snap_scaffold_310-snap.2-T1, internal, 436, 545
Couldn't classify 6962, 7057
Sorry, prediction GlimmerHMM_glimmerT_60176-T1 fails validation.
(ATG)	 TG	3720-3742	GT	GAG
(ATG)	 AG	6043-6256	GT	GAG
(GGG)	 AG	6962-7057	GT	GGG
-recovered GlimmerHMM_glimmerT_60176-T1, initial, 3720, 3742
add_exon() Sorry, GlimmerHMM_glimmerT_60176-T1 6043-6256-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_60176-T1, initial, 6043, 6256
-recovered GlimmerHMM_glimmerT_60176-T1, internal, 6043, 6256
-recovered GlimmerHMM_glimmerT_60176-T1, internal, 6962, 7057
Couldn't classify 6962, 7057
Sorry, prediction snap_scaffold_310-snap.4-T1 fails validation.
(ATG)	 TG	3720-3742	GT	GAG
(ATG)	 AG	6043-6256	GT	GAG
(GGG)	 AG	6962-7057	GT	GGG
-recovered snap_scaffold_310-snap.4-T1, initial, 3720, 3742
add_exon() Sorry, snap_scaffold_310-snap.4-T1 6043-6256-initial-1 is invalid.
-recovered snap_scaffold_310-snap.4-T1, initial, 6043, 6256
-recovered snap_scaffold_310-snap.4-T1, internal, 6043, 6256
-recovered snap_scaffold_310-snap.4-T1, internal, 6962, 7057

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2038, 2196
Couldn't classify 8083, 8115
Sorry, prediction snap_scaffold_310-snap.1-T1 fails validation.
(ACG)	 AG	2038-2196	GT	AGG
(GGT)	 AG	3600-3767	GT	TGG
(ACA)	 AG	7560-7625	GT	TAG
(GAC)	 AG	8083-8115	GT	GGG
-recovered snap_scaffold_310-snap.1-T1, internal, 2038, 2196
-recovered snap_scaffold_310-snap.1-T1, internal, 3600, 3767
-recovered snap_scaffold_310-snap.1-T1, internal, 7560, 7625
-recovered snap_scaffold_310-snap.1-T1, internal, 8083, 8115

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6262, rend_intergenic: 224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8299
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 6262, rend_intergenic: 224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support