-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_31

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_31-snap.6-T1
Valid prediction for snap_scaffold_31-snap.11-T1
Valid prediction for GlimmerHMM_glimmerT_59480-T1
Valid prediction for GlimmerHMM_glimmerT_59481-T1
Valid prediction for Augustus_model.g39396.t1
Valid prediction for Augustus_model.g39395.t1
Valid prediction for GlimmerHMM_glimmerT_59482-T1
Valid prediction for snap_scaffold_31-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_31-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_59476-T1
Valid prediction for GlimmerHMM_glimmerT_59479-T1
Valid prediction for Augustus_model.g39394.t1
Valid prediction for GlimmerHMM_glimmerT_59469-T1
Valid prediction for GlimmerHMM_glimmerT_59470-T1
Valid prediction for GlimmerHMM_glimmerT_59477-T1
Valid prediction for GlimmerHMM_glimmerT_59475-T1
Valid prediction for snap_scaffold_31-snap.9-T1
Valid prediction for GlimmerHMM_glimmerT_59467-T1
Valid prediction for snap_scaffold_31-snap.13-T1
Valid prediction for snap_scaffold_31-snap.3-T1
Valid prediction for snap_scaffold_31-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59471-T1
Valid prediction for snap_scaffold_31-snap.12-T1
Valid prediction for GlimmerHMM_glimmerT_59473-T1
Valid prediction for GlimmerHMM_glimmerT_59472-T1
Valid prediction for GlimmerHMM_glimmerT_59474-T1
Valid prediction for snap_scaffold_31-snap.8-T1
Valid prediction for snap_scaffold_31-snap.4-T1
Valid prediction for snap_scaffold_31-snap.10-T1
Valid prediction for GlimmerHMM_glimmerT_59478-T1
Valid prediction for GlimmerHMM_glimmerT_59468-T1
Valid prediction for snap_scaffold_31-snap.5-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47337, rend_intergenic: 45156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 50970
-exon list size: 89


building trellis

1.1    
2.2    
3.3    
4.4    
5.5    
6.6    
7.7    
8.8    
9.9    
11.0    
12.1    
13.2    
14.3    
15.4    
16.5    
17.6    
18.7    
19.8    
20.9    
22.0    
23.1    
24.2    
25.3    
26.4    
27.5    
28.6    
29.7    
30.8    
31.9    
33.0    
34.1    
35.2    
36.3    
37.4    
38.5    
39.6    
40.7    
41.8    
42.9    
44.0    
45.1    
46.2    
47.3    
48.4    
49.5    
50.5    
51.6    
52.7    
53.8    
54.9    
56.0    
57.1    
58.2    
59.3    
60.4    
61.5    
62.6    
63.7    
64.8    
65.9    
67.0    
68.1    
69.2    
70.3    
71.4    
72.5    
73.6    
74.7    
75.8    
76.9    
78.0    
79.1    
80.2    
81.3    
82.4    
83.5    
84.6    
85.7    
86.8    
87.9    
89.0    
90.1    
91.2    
92.3    
93.4    
94.5    
95.6    
96.7    
97.8    
98.9    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 47337, rend_intergenic: 45156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support