-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_308

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7821, 7870
Sorry, prediction snap_scaffold_308-snap.2-T1 fails validation.
(ATG)	 AG	3064-3088	GT	ACG
(GAT)	 AG	7397-7770	GT	AAG
(CCA)	 AG	7821-7870	GT	ATG
-recovered snap_scaffold_308-snap.2-T1, initial, 3064, 3088
-recovered snap_scaffold_308-snap.2-T1, internal, 3064, 3088
-recovered snap_scaffold_308-snap.2-T1, internal, 7397, 7770
-recovered snap_scaffold_308-snap.2-T1, internal, 7821, 7870
Valid prediction for GlimmerHMM_glimmerT_60172-T1
Valid prediction for snap_scaffold_308-snap.1-T1
add_exon() Sorry, snap_scaffold_308-snap.1-T1 2549-2828-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8309
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support