-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_307

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 27, 157
Couldn't classify 8019, 8180
Sorry, prediction snap_scaffold_307-snap.2-T1 fails validation.
(CCC)	 AG	27-157	GT	AAG
(GCC)	 AG	486-542	GT	GGG
(GTG)	 AG	547-645	GT	TGG
(GGG)	 AG	3590-3841	GT	AAG
(CTC)	 AG	4231-4293	GT	GGG
(GCG)	 AG	4337-4455	GT	CGG
(AGG)	 AG	5445-5628	GT	TCG
(GCT)	 AG	7528-7693	GT	AGG
(GGA)	 AG	8019-8180	GT	AGG
-recovered snap_scaffold_307-snap.2-T1, internal, 27, 157
-recovered snap_scaffold_307-snap.2-T1, internal, 486, 542
-recovered snap_scaffold_307-snap.2-T1, internal, 547, 645
-recovered snap_scaffold_307-snap.2-T1, internal, 3590, 3841
-recovered snap_scaffold_307-snap.2-T1, internal, 4231, 4293
-recovered snap_scaffold_307-snap.2-T1, internal, 4337, 4455
-recovered snap_scaffold_307-snap.2-T1, internal, 5445, 5628
-recovered snap_scaffold_307-snap.2-T1, internal, 7528, 7693
-recovered snap_scaffold_307-snap.2-T1, internal, 8019, 8180
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 8019, 8204
Sorry, prediction GlimmerHMM_glimmerT_60171-T1 fails validation.
(ATG)	 TC	7353-7355	GT	TGG
(GCT)	 AG	7528-7693	GT	AGG
(GGA)	 AG	8019-8204	GT	AGG
-recovered GlimmerHMM_glimmerT_60171-T1, initial, 7353, 7355
-recovered GlimmerHMM_glimmerT_60171-T1, internal, 7528, 7693
-recovered GlimmerHMM_glimmerT_60171-T1, internal, 8019, 8204
Couldn't classify 8019, 8180
Sorry, prediction Augustus_model.g39840.t1 fails validation.
(ATG)	 TC	7353-7355	GT	TGG
(GCT)	 AG	7528-7693	GT	AGG
(GGA)	 AG	8019-8180	GT	AGG
-recovered Augustus_model.g39840.t1, initial, 7353, 7355
-recovered Augustus_model.g39840.t1, internal, 7528, 7693
-recovered Augustus_model.g39840.t1, internal, 8019, 8180
Couldn't classify 7534, 7693
Couldn't classify 8019, 8179
Sorry, prediction pasa_asmbl_40925.p1 fails validation.
(GCG)	 CA	7534-7693	GT	AGG
(GGA)	 AG	8019-8179	GG	CAG

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60169-T1
Valid prediction for Augustus_model.g39839.t1
Couldn't classify 8200, 8307
Sorry, prediction snap_scaffold_307-snap.1-T1 fails validation.
(ATG)	 AG	3779-4076	GT	AGG
(GAG)	 AG	4518-4814	GT	AGG
(GCT)	 AG	7660-7965	GT	AGG
(GTG)	 AG	8200-8307	GT	AGG
-recovered snap_scaffold_307-snap.1-T1, initial, 3779, 4076
-recovered snap_scaffold_307-snap.1-T1, internal, 3779, 4076
-recovered snap_scaffold_307-snap.1-T1, internal, 4518, 4814
-recovered snap_scaffold_307-snap.1-T1, internal, 7660, 7965
-recovered snap_scaffold_307-snap.1-T1, internal, 8200, 8307
Couldn't classify 226, 301
Sorry, prediction snap_scaffold_307-snap.3-T1 fails validation.
(CAC)	 AG	226-301	GT	CTG
(GGA)	 AG	566-763	GT	AGG
(GCC)	 AG	2819-2983	AG	GAA
-recovered snap_scaffold_307-snap.3-T1, terminal, 2819, 2983
-recovered snap_scaffold_307-snap.3-T1, internal, 226, 301
-recovered snap_scaffold_307-snap.3-T1, internal, 566, 763
Valid prediction for GlimmerHMM_glimmerT_60170-T1
Couldn't classify 8200, 8307
Sorry, prediction Augustus_model.g39838.t1 fails validation.
(ATG)	 CG	7722-7965	GT	AGG
(GTG)	 AG	8200-8307	GT	AGG
-recovered Augustus_model.g39838.t1, initial, 7722, 7965
-recovered Augustus_model.g39838.t1, internal, 8200, 8307

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4539, rend_intergenic: 27  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8180, rend_intergenic: 5335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8317
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4539, rend_intergenic: 27  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8180, rend_intergenic: 5335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support