-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3058

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 135, 286
Couldn't classify 708, 839
Sorry, prediction Augustus_model.g41065.t1 fails validation.
(GAG)	 AG	135-286	GT	AGG
(GTC)	 AG	454-579	GT	AGG
(GGT)	 AG	708-839	GT	ATG
-recovered Augustus_model.g41065.t1, internal, 135, 286
-recovered Augustus_model.g41065.t1, internal, 454, 579
-recovered Augustus_model.g41065.t1, internal, 708, 839
Couldn't classify 135, 286
Couldn't classify 708, 839
Sorry, prediction snap_scaffold_3058-snap.1-T1 fails validation.
(GAG)	 AG	135-286	GT	AGG
(GTC)	 AG	454-579	GT	AGG
(GGT)	 AG	708-839	GT	ATG
-recovered snap_scaffold_3058-snap.1-T1, internal, 135, 286
-recovered snap_scaffold_3058-snap.1-T1, internal, 454, 579
-recovered snap_scaffold_3058-snap.1-T1, internal, 708, 839
Couldn't classify 490, 579
Couldn't classify 708, 914
Sorry, prediction pasa_asmbl_40921.p2 fails validation.
(GAG)	 CC	490-579	GT	AGG
(GGT)	 AG	708-914	GC	AAG
-recovered pasa_asmbl_40921.p2, internal, 708, 914
Couldn't classify 135, 286
Sorry, prediction GlimmerHMM_glimmerT_61768-T1 fails validation.
(GAG)	 AG	135-286	GT	AGG
(GTC)	 AG	454-579	GT	AGG
(TGA)	 AG	659-661	CC	GAC
-recovered GlimmerHMM_glimmerT_61768-T1, terminal, 659, 661
-recovered GlimmerHMM_glimmerT_61768-T1, internal, 135, 286
-recovered GlimmerHMM_glimmerT_61768-T1, internal, 454, 579

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1074
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support