-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_304

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60164-T1
Valid prediction for snap_scaffold_304-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2118, 2318
Sorry, prediction GlimmerHMM_glimmerT_60165-T1 fails validation.
(CAC)	 AG	2118-2318	GT	AGG
(TCC)	 AG	2854-3009	TA	AGT
-recovered GlimmerHMM_glimmerT_60165-T1, terminal, 2854, 3009
-recovered GlimmerHMM_glimmerT_60165-T1, internal, 2118, 2318
Valid prediction for GlimmerHMM_glimmerT_60163-T1
Couldn't classify 2160, 2318
Couldn't classify 2854, 3003
Sorry, prediction pasa_asmbl_40919.p1 fails validation.
(TTC)	 CC	2160-2318	GT	AGG
(TCC)	 AG	2854-3003	AA	CCA
Couldn't classify 2118, 2318
Sorry, prediction snap_scaffold_304-snap.3-T1 fails validation.
(CAC)	 AG	2118-2318	GT	AGG
(TCC)	 AG	2854-3008	GT	TAG
(TTA)	 AG	3453-3686	GT	CTG
(CTA)	 AG	4068-4196	GT	AGG
(AGA)	 AG	4792-4849	GA	GAG
-recovered snap_scaffold_304-snap.3-T1, terminal, 4792, 4849
-recovered snap_scaffold_304-snap.3-T1, internal, 2118, 2318
-recovered snap_scaffold_304-snap.3-T1, internal, 2854, 3008
-recovered snap_scaffold_304-snap.3-T1, internal, 3453, 3686
-recovered snap_scaffold_304-snap.3-T1, internal, 4068, 4196
Valid prediction for snap_scaffold_304-snap.2-T1
Couldn't classify 7121, 7275
Sorry, prediction Augustus_model.g39836.t1 fails validation.
(ATG)	 AG	2172-2318	GT	AGG
(TCC)	 AG	2854-3008	GT	TAG
(TTA)	 AG	3453-3581	GT	AGG
(CTA)	 AG	4068-4196	GT	AGG
(AGG)	 AG	4362-4456	GT	ATG
(GAT)	 AG	7121-7275	GT	AGG
-recovered Augustus_model.g39836.t1, initial, 2172, 2318
-recovered Augustus_model.g39836.t1, internal, 2172, 2318
-recovered Augustus_model.g39836.t1, internal, 2854, 3008
-recovered Augustus_model.g39836.t1, internal, 3453, 3581
-recovered Augustus_model.g39836.t1, internal, 4068, 4196
-recovered Augustus_model.g39836.t1, internal, 4362, 4456
-recovered Augustus_model.g39836.t1, internal, 7121, 7275

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8391
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 3 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support