-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_303

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_303-snap.2-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 7424, 7728
Sorry, prediction snap_scaffold_303-snap.4-T1 fails validation.
(ATG)	 AG	4726-4797	GT	TGG
(AGA)	 AG	7424-7728	GT	AGG
-recovered snap_scaffold_303-snap.4-T1, initial, 4726, 4797
-recovered snap_scaffold_303-snap.4-T1, internal, 4726, 4797
-recovered snap_scaffold_303-snap.4-T1, internal, 7424, 7728
Valid prediction for GlimmerHMM_glimmerT_60161-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60161-T1 112-296-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_303-snap.3-T1
Couldn't classify 7865, 8355
Sorry, prediction snap_scaffold_303-snap.1-T1 fails validation.
(ATG)	 AT	4366-5014	GT	AGG
(GTT)	 AG	5342-5547	GT	AGG
(GTG)	 AG	5864-5998	GT	CCG
(GTG)	 AG	6969-7148	GT	AGG
(GAC)	 AG	7715-7781	GT	AGG
(GGG)	 AG	7865-8355	GT	TGG
-recovered snap_scaffold_303-snap.1-T1, initial, 4366, 5014
-recovered snap_scaffold_303-snap.1-T1, internal, 5342, 5547
-recovered snap_scaffold_303-snap.1-T1, internal, 5864, 5998
-recovered snap_scaffold_303-snap.1-T1, internal, 6969, 7148
-recovered snap_scaffold_303-snap.1-T1, internal, 7715, 7781
-recovered snap_scaffold_303-snap.1-T1, internal, 7865, 8355
Couldn't classify 8171, 8410
Sorry, prediction Augustus_model.g39835.t1 fails validation.
(ATG)	 AT	4366-5014	GT	AGG
(GTT)	 AG	5342-5547	GT	AGG
(GTG)	 AG	5864-6016	GT	AGG
(GTG)	 AG	6969-7148	GT	AGG
(GAC)	 AG	7715-7781	GT	AGG
(GGG)	 AG	7865-7972	GT	CTG
(AGG)	 AG	8171-8410		GC
-recovered Augustus_model.g39835.t1, initial, 4366, 5014
-recovered Augustus_model.g39835.t1, internal, 5342, 5547
-recovered Augustus_model.g39835.t1, internal, 5864, 6016
-recovered Augustus_model.g39835.t1, internal, 6969, 7148
-recovered Augustus_model.g39835.t1, internal, 7715, 7781
-recovered Augustus_model.g39835.t1, internal, 7865, 7972
Couldn't classify 4419, 5014
Sorry, prediction GlimmerHMM_glimmerT_60162-T1 fails validation.
(CGG)	 AG	4419-5014	GT	AGG
(GTT)	 AG	5342-5547	GT	AGG
(GTG)	 AG	5864-5998	GT	CCG
(GTG)	 AG	6969-7190	TA	AGT
-recovered GlimmerHMM_glimmerT_60162-T1, terminal, 6969, 7190
-recovered GlimmerHMM_glimmerT_60162-T1, internal, 4419, 5014
-recovered GlimmerHMM_glimmerT_60162-T1, internal, 5342, 5547
-recovered GlimmerHMM_glimmerT_60162-T1, internal, 5864, 5998

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4045, rend_intergenic: 390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6485, rend_intergenic: 4726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8410
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4045, rend_intergenic: 390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6485, rend_intergenic: 4726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support