-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3014

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61757-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61757-T1 774-1050-terminal-1 is invalid.
Valid prediction for Augustus_model.g41053.t1
add_exon() Sorry, Augustus_model.g41053.t1 774-1050-terminal-1 is invalid.
Couldn't classify 774, 990
Sorry, prediction snap_scaffold_3014-snap.1-T1 fails validation.
(ATC)	 AG	774-990	GT	GGG
-recovered snap_scaffold_3014-snap.1-T1, internal, 774, 990

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1083
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support