-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_301

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1478, 1918
Sorry, prediction snap_scaffold_301-snap.1-T1 fails validation.
(AAA)	 AG	1478-1918	GT	AGG
(GTC)	 AG	4556-4808	GT	AGG
(GCG)	 AG	4966-5152	GT	TGG
(GTG)	 AG	5571-5650	GT	CGG
(ATT)	 AG	6272-6338	GA	GAG
-recovered snap_scaffold_301-snap.1-T1, terminal, 4556, 4808
-recovered snap_scaffold_301-snap.1-T1, terminal, 6272, 6338
-recovered snap_scaffold_301-snap.1-T1, internal, 1478, 1918
-recovered snap_scaffold_301-snap.1-T1, internal, 4556, 4808
-recovered snap_scaffold_301-snap.1-T1, internal, 4966, 5152
-recovered snap_scaffold_301-snap.1-T1, internal, 5571, 5650

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2776, 2927
Sorry, prediction snap_scaffold_301-snap.2-T1 fails validation.
(ATC)	 AG	2776-2927	GT	CAG
(ACC)	 AG	3062-3315	GT	CAG
(AAC)	 AG	3343-3512	GT	AAG
(ACC)	 AG	3627-3884	GT	AGG
(GAA)	 AG	6470-6542	AC	GAA
-recovered snap_scaffold_301-snap.2-T1, terminal, 6470, 6542
-recovered snap_scaffold_301-snap.2-T1, internal, 2776, 2927
-recovered snap_scaffold_301-snap.2-T1, internal, 3062, 3315
-recovered snap_scaffold_301-snap.2-T1, internal, 3343, 3512
-recovered snap_scaffold_301-snap.2-T1, internal, 3627, 3884
Valid prediction for GlimmerHMM_glimmerT_60159-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6338, rend_intergenic: 1878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8419
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6338, rend_intergenic: 1878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support