-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3002

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 304, 401
Sorry, prediction GlimmerHMM_glimmerT_61755-T1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-1004	AA	AGA
-recovered GlimmerHMM_glimmerT_61755-T1, terminal, 875, 1004
-recovered GlimmerHMM_glimmerT_61755-T1, internal, 304, 401
Couldn't classify 304, 401
Couldn't classify 875, 962
Sorry, prediction snap_scaffold_3002-snap.1-T1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-962	GT	AGG
-recovered snap_scaffold_3002-snap.1-T1, internal, 304, 401
-recovered snap_scaffold_3002-snap.1-T1, internal, 875, 962
Couldn't classify 304, 401
Sorry, prediction Augustus_model.g41050.t1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-1004	AA	AGA
-recovered Augustus_model.g41050.t1, terminal, 875, 1004
-recovered Augustus_model.g41050.t1, internal, 304, 401

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1084
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support