-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_300

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_46493-T1
Valid prediction for CodingQuarry_transcript_46492-T1
Valid prediction for GlimmerHMM_glimmerT_60155-T1
Valid prediction for GlimmerHMM_glimmerT_60156-T1
Valid prediction for HiQ_model.g39833.t1
Valid prediction for snap_scaffold_300-snap.1-T1
Valid prediction for pasa_asmbl_40904.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_300-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60157-T1
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 1293, 1352
Couldn't classify 1401, 1586
Sorry, prediction CodingQuarry_transcript_46494-T1 fails validation.
(ATG)	 CT	1293-1352	CT	ACC
(CTG)	 AC	1401-1586	CA	GAC
Valid prediction for Augustus_model.g39834.t1
Valid prediction for GlimmerHMM_glimmerT_60158-T1
Valid prediction for snap_scaffold_300-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4141, rend_intergenic: 1335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8428
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 4141, rend_intergenic: 1335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support