-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_30

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_30-snap.5-T1
Valid prediction for Augustus_model.g39389.t1
Valid prediction for GlimmerHMM_glimmerT_59465-T1
Valid prediction for snap_scaffold_30-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59455-T1
Valid prediction for GlimmerHMM_glimmerT_59457-T1
Valid prediction for Augustus_model.g39386.t1
Valid prediction for Augustus_model.g39393.t1
Valid prediction for snap_scaffold_30-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59458-T1
Valid prediction for snap_scaffold_30-snap.10-T1
Couldn't classify 17103, 17540
Sorry, prediction pasa_asmbl_40896.p1 fails validation.
(GCG)	 AC	17103-17540	GA	ATG
Valid prediction for Augustus_model.g39390.t1
Valid prediction for Augustus_model.g39387.t1
Valid prediction for snap_scaffold_30-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_59462-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59464-T1
Valid prediction for snap_scaffold_30-snap.7-T1
Valid prediction for Augustus_model.g39391.t1
Valid prediction for Augustus_model.g39392.t1
Valid prediction for snap_scaffold_30-snap.9-T1
Valid prediction for Augustus_model.g39385.t1
Valid prediction for GlimmerHMM_glimmerT_59461-T1
Valid prediction for GlimmerHMM_glimmerT_59466-T1
Valid prediction for Augustus_model.g39388.t1
Valid prediction for snap_scaffold_30-snap.6-T1
Valid prediction for snap_scaffold_30-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_59459-T1
Valid prediction for GlimmerHMM_glimmerT_59456-T1
Valid prediction for GlimmerHMM_glimmerT_59460-T1
Valid prediction for snap_scaffold_30-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59454-T1
Valid prediction for GlimmerHMM_glimmerT_59463-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4723, rend_intergenic: 3497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10380, rend_intergenic: 7892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14386, rend_intergenic: 11376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17566, rend_intergenic: 14878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36702, rend_intergenic: 34333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41010, rend_intergenic: 37440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 52216
-exon list size: 101


building trellis

1.0    
1.9    
2.9    
3.9    
4.9    
5.8    
6.8    
7.8    
8.7    
9.7    
10.7    
11.7    
12.6    
13.6    
14.6    
15.5    
16.5    
17.5    
18.4    
19.4    
20.4    
21.4    
22.3    
23.3    
24.3    
25.2    
26.2    
27.2    
28.2    
29.1    
30.1    
31.1    
32.0    
33.0    
34.0    
35.0    
35.9    
36.9    
37.9    
38.8    
39.8    
40.8    
41.7    
42.7    
43.7    
44.7    
45.6    
46.6    
47.6    
48.5    
49.5    
50.5    
51.5    
52.4    
53.4    
54.4    
55.3    
56.3    
57.3    
58.3    
59.2    
60.2    
61.2    
62.1    
63.1    
64.1    
65.0    
66.0    
67.0    
68.0    
68.9    
69.9    
70.9    
71.8    
72.8    
73.8    
74.8    
75.7    
76.7    
77.7    
78.6    
79.6    
80.6    
81.6    
82.5    
83.5    
84.5    
85.4    
86.4    
87.4    
88.3    
89.3    
90.3    
91.3    
92.2    
93.2    
94.2    
95.1    
96.1    
97.1    
98.1    
99.0    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 4723, rend_intergenic: 3497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10380, rend_intergenic: 7892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14386, rend_intergenic: 11376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17566, rend_intergenic: 14878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36702, rend_intergenic: 34333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41010, rend_intergenic: 37440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support