-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_9980437-10140382

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.1969-T1
Valid prediction for GlimmerHMM_glimmerT_7144-T1
Valid prediction for snap_scaffold_3-snap.1979-T1
Valid prediction for Augustus_model.g4666.t1
Valid prediction for GlimmerHMM_glimmerT_7145-T1
Valid prediction for snap_scaffold_3-snap.1990-T1
Valid prediction for Augustus_model.g4662.t1
Valid prediction for GlimmerHMM_glimmerT_7162-T1
Valid prediction for GlimmerHMM_glimmerT_7173-T1
Valid prediction for GlimmerHMM_glimmerT_7161-T1
Valid prediction for snap_scaffold_3-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_7159-T1
Valid prediction for GlimmerHMM_glimmerT_7150-T1
Valid prediction for GlimmerHMM_glimmerT_7146-T1
Valid prediction for Augustus_model.g4673.t1
Valid prediction for GlimmerHMM_glimmerT_7166-T1
Valid prediction for snap_scaffold_3-snap.1982-T1
Valid prediction for snap_scaffold_3-snap.1978-T1
Valid prediction for Augustus_model.g4659.t1
Valid prediction for GlimmerHMM_glimmerT_7170-T1
Valid prediction for Augustus_model.g4667.t1
Valid prediction for GlimmerHMM_glimmerT_7169-T1
Valid prediction for GlimmerHMM_glimmerT_7153-T1
Valid prediction for snap_scaffold_3-snap.1975-T1
Valid prediction for snap_scaffold_3-snap.1999-T1
Valid prediction for GlimmerHMM_glimmerT_7156-T1
Valid prediction for snap_scaffold_3-snap.1976-T1
Valid prediction for GlimmerHMM_glimmerT_7158-T1
Valid prediction for snap_scaffold_3-snap.1989-T1
Valid prediction for Augustus_model.g4668.t1
Valid prediction for snap_scaffold_3-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_7148-T1
Valid prediction for Augustus_model.g4664.t1
Valid prediction for GlimmerHMM_glimmerT_7164-T1
Valid prediction for snap_scaffold_3-snap.1992-T1
Valid prediction for Augustus_model.g4669.t1
Valid prediction for snap_scaffold_3-snap.1986-T1
Valid prediction for snap_scaffold_3-snap.1977-T1
Valid prediction for Augustus_model.g4660.t1
Valid prediction for snap_scaffold_3-snap.1997-T1
Valid prediction for GlimmerHMM_glimmerT_7149-T1
Valid prediction for snap_scaffold_3-snap.1983-T1
Valid prediction for Augustus_model.g4671.t1
Valid prediction for snap_scaffold_3-snap.1971-T1
Valid prediction for GlimmerHMM_glimmerT_7152-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.1993-T1
Valid prediction for Augustus_model.g4663.t1
Valid prediction for GlimmerHMM_glimmerT_7151-T1
Valid prediction for snap_scaffold_3-snap.1991-T1
Valid prediction for GlimmerHMM_glimmerT_7154-T1
Valid prediction for snap_scaffold_3-snap.1973-T1
Valid prediction for snap_scaffold_3-snap.1968-T1
Valid prediction for snap_scaffold_3-snap.1987-T1
Valid prediction for snap_scaffold_3-snap.1974-T1
Valid prediction for Augustus_model.g4665.t1
Valid prediction for GlimmerHMM_glimmerT_7165-T1
Valid prediction for GlimmerHMM_glimmerT_7147-T1
Valid prediction for GlimmerHMM_glimmerT_7168-T1
Valid prediction for snap_scaffold_3-snap.1996-T1
Valid prediction for snap_scaffold_3-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_7163-T1
Valid prediction for Augustus_model.g4661.t1
Valid prediction for Augustus_model.g4670.t1
Valid prediction for GlimmerHMM_glimmerT_7172-T1
Valid prediction for GlimmerHMM_glimmerT_7157-T1
Valid prediction for snap_scaffold_3-snap.1970-T1
Valid prediction for GlimmerHMM_glimmerT_7160-T1
Valid prediction for snap_scaffold_3-snap.1985-T1
Valid prediction for snap_scaffold_3-snap.1984-T1
Valid prediction for snap_scaffold_3-snap.1998-T1
Valid prediction for snap_scaffold_3-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_7167-T1
Valid prediction for GlimmerHMM_glimmerT_7155-T1
Valid prediction for Augustus_model.g4672.t1
Valid prediction for snap_scaffold_3-snap.1980-T1
Valid prediction for GlimmerHMM_glimmerT_7171-T1
Valid prediction for snap_scaffold_3-snap.1995-T1
Valid prediction for snap_scaffold_3-snap.1972-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10546, rend_intergenic: 2717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17999, rend_intergenic: 16567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21864, rend_intergenic: 20022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45606, rend_intergenic: 43991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58312, rend_intergenic: 56729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82905, rend_intergenic: 75427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87101, rend_intergenic: 84684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136920, rend_intergenic: 135075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149754, rend_intergenic: 146620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152816, rend_intergenic: 150918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156840, rend_intergenic: 154262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 159946
-exon list size: 263


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.6    
3.0    
3.4    
3.8    
4.2    
4.5    
4.9    
5.3    
5.7    
6.0    
6.4    
6.8    
7.2    
7.5    
7.9    
8.3    
8.7    
9.1    
9.4    
9.8    
10.2    
10.6    
10.9    
11.3    
11.7    
12.1    
12.5    
12.8    
13.2    
13.6    
14.0    
14.3    
14.7    
15.1    
15.5    
15.8    
16.2    
16.6    
17.0    
17.4    
17.7    
18.1    
18.5    
18.9    
19.2    
19.6    
20.0    
20.4    
20.8    
21.1    
21.5    
21.9    
22.3    
22.6    
23.0    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.7    
26.0    
26.4    
26.8    
27.2    
27.5    
27.9    
28.3    
28.7    
29.1    
29.4    
29.8    
30.2    
30.6    
30.9    
31.3    
31.7    
32.1    
32.5    
32.8    
33.2    
33.6    
34.0    
34.3    
34.7    
35.1    
35.5    
35.8    
36.2    
36.6    
37.0    
37.4    
37.7    
38.1    
38.5    
38.9    
39.2    
39.6    
40.0    
40.4    
40.8    
41.1    
41.5    
41.9    
42.3    
42.6    
43.0    
43.4    
43.8    
44.2    
44.5    
44.9    
45.3    
45.7    
46.0    
46.4    
46.8    
47.2    
47.5    
47.9    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.1    
52.5    
52.8    
53.2    
53.6    
54.0    
54.3    
54.7    
55.1    
55.5    
55.8    
56.2    
56.6    
57.0    
57.4    
57.7    
58.1    
58.5    
58.9    
59.2    
59.6    
60.0    
60.4    
60.8    
61.1    
61.5    
61.9    
62.3    
62.6    
63.0    
63.4    
63.8    
64.2    
64.5    
64.9    
65.3    
65.7    
66.0    
66.4    
66.8    
67.2    
67.5    
67.9    
68.3    
68.7    
69.1    
69.4    
69.8    
70.2    
70.6    
70.9    
71.3    
71.7    
72.1    
72.5    
72.8    
73.2    
73.6    
74.0    
74.3    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
77.0    
77.4    
77.7    
78.1    
78.5    
78.9    
79.2    
79.6    
80.0    
80.4    
80.8    
81.1    
81.5    
81.9    
82.3    
82.6    
83.0    
83.4    
83.8    
84.2    
84.5    
84.9    
85.3    
85.7    
86.0    
86.4    
86.8    
87.2    
87.5    
87.9    
88.3    
88.7    
89.1    
89.4    
89.8    
90.2    
90.6    
90.9    
91.3    
91.7    
92.1    
92.5    
92.8    
93.2    
93.6    
94.0    
94.3    
94.7    
95.1    
95.5    
95.8    
96.2    
96.6    
97.0    
97.4    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 10546, rend_intergenic: 2717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17999, rend_intergenic: 16567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21864, rend_intergenic: 20022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45606, rend_intergenic: 43991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58312, rend_intergenic: 56729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82905, rend_intergenic: 75427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87101, rend_intergenic: 84684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136920, rend_intergenic: 135075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149754, rend_intergenic: 146620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152816, rend_intergenic: 150918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156840, rend_intergenic: 154262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support