-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_6728011-6958736

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_6729-T1
Valid prediction for pasa_asmbl_40143.p1
Valid prediction for CodingQuarry_transcript_46197-T1
Couldn't classify 87515, 87551
Couldn't classify 90219, 90344
Sorry, prediction pasa_asmbl_40133.p1 fails validation.
(AAA)	 GC	87515-87551	GT	AGG
(GAA)	 AG	87653-87726	GT	CAG
(CTA)	 AG	87852-87965	GT	AAG
(GAG)	 AG	88067-88204	GT	TGG
(GTG)	 AG	88358-88972	GT	AGG
(CTC)	 AG	89140-89241	GT	TGG
(TAT)	 AG	89618-89776	GT	GGG
(GTG)	 AG	89949-90128	GT	TGG
(ATC)	 AG	90219-90344	CA	CCC
-recovered pasa_asmbl_40133.p1, internal, 87653, 87726
-recovered pasa_asmbl_40133.p1, internal, 87852, 87965
-recovered pasa_asmbl_40133.p1, internal, 88067, 88204
-recovered pasa_asmbl_40133.p1, internal, 88358, 88972
-recovered pasa_asmbl_40133.p1, internal, 89140, 89241
-recovered pasa_asmbl_40133.p1, internal, 89618, 89776
-recovered pasa_asmbl_40133.p1, internal, 89949, 90128
Valid prediction for snap_scaffold_3-snap.1366-T1
Valid prediction for Augustus_model.g4384.t1
Valid prediction for GlimmerHMM_glimmerT_6742-T1
Valid prediction for snap_scaffold_3-snap.1391-T1
Couldn't classify 110067, 110125
Sorry, prediction pasa_asmbl_40141.p1 fails validation.
(TCC)	 CC	110067-110125	GT	GGG
(CTG)	 AG	110246-110422	GT	GAG
(GAG)	 AG	110517-110562	GT	AGG
(GTC)	 AG	110964-111025	GT	AGG
(TAC)	 AG	111105-111254	GT	AGG
(GAT)	 AG	111751-111847	GT	AGG
(GCT)	 AG	112043-112081	TG	AAT
-recovered pasa_asmbl_40141.p1, terminal, 112043, 112081
-recovered pasa_asmbl_40141.p1, internal, 110246, 110422
-recovered pasa_asmbl_40141.p1, internal, 110517, 110562
-recovered pasa_asmbl_40141.p1, internal, 110964, 111025
-recovered pasa_asmbl_40141.p1, internal, 111105, 111254
-recovered pasa_asmbl_40141.p1, internal, 111751, 111847
Valid prediction for pasa_asmbl_40132.p1
Valid prediction for GlimmerHMM_glimmerT_6725-T1
Valid prediction for GlimmerHMM_glimmerT_6730-T1
Valid prediction for Augustus_model.g4369.t1
Valid prediction for Augustus_model.g4389.t1
Valid prediction for snap_scaffold_3-snap.1378-T1
Valid prediction for Augustus_model.g4394.t1
Couldn't classify 214714, 214808
Sorry, prediction pasa_asmbl_40811.p1 fails validation.
(ATG)	 AT	214025-214604	GT	AGG
(AAG)	 AG	214714-214808	CC	CCC
-recovered pasa_asmbl_40811.p1, initial, 214025, 214604
Couldn't classify 108545, 108655
Couldn't classify 109732, 109800
Sorry, prediction pasa_asmbl_40802.p1 fails validation.
(GGT)	 GA	108545-108655	GT	CAG
(GGC)	 AG	108750-108827	GT	AGG
(GGT)	 AG	108993-109129	GT	CTG
(TAA)	 AG	109233-109388	GT	AGG
(TCC)	 AG	109475-109592	GT	AGG
(GCG)	 AG	109732-109800	TA	CCT
-recovered pasa_asmbl_40802.p1, internal, 108750, 108827
-recovered pasa_asmbl_40802.p1, internal, 108993, 109129
-recovered pasa_asmbl_40802.p1, internal, 109233, 109388
-recovered pasa_asmbl_40802.p1, internal, 109475, 109592
Valid prediction for GlimmerHMM_glimmerT_6736-T1
Valid prediction for GlimmerHMM_glimmerT_6721-T1
Valid prediction for snap_scaffold_3-snap.1368-T1
Couldn't classify 101518, 102256
Couldn't classify 102693, 102744
Sorry, prediction pasa_asmbl_40137.p1 fails validation.
(GAT)	 AT	101518-102256	GT	TGG
(CAT)	 AG	102445-102607	GT	AGG
(GCT)	 AG	102693-102744	GC	TGG
-recovered pasa_asmbl_40137.p1, internal, 102445, 102607
-recovered pasa_asmbl_40137.p1, internal, 102693, 102744
Valid prediction for Augustus_model.g4396.t1
Valid prediction for snap_scaffold_3-snap.1381-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g4385.t1
Valid prediction for snap_scaffold_3-snap.1398-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_6732-T1
Valid prediction for snap_scaffold_3-snap.1384-T1
Valid prediction for Augustus_model.g4375.t1
Valid prediction for pasa_asmbl_40879.p1
Couldn't classify 215212, 215784
Sorry, prediction pasa_asmbl_40146.p1 fails validation.
(TCC)	 AT	215212-215784	CG	AAC
Valid prediction for snap_scaffold_3-snap.1370-T1
Valid prediction for snap_scaffold_3-snap.1394-T1
Valid prediction for HiQ_model.g4372.t1
Valid prediction for GlimmerHMM_glimmerT_6728-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_6731-T1
Couldn't classify 984, 1701
Sorry, prediction pasa_asmbl_40130.p1 fails validation.
(CCG)	 AC	984-1701	GT	AGG
(GTG)	 AG	2525-2802	CC	GAC
-recovered pasa_asmbl_40130.p1, terminal, 2525, 2802
Valid prediction for Augustus_model.g4383.t1
Valid prediction for GlimmerHMM_glimmerT_6727-T1
Valid prediction for Augustus_model.g4370.t1
Valid prediction for snap_scaffold_3-snap.1372-T1
Valid prediction for snap_scaffold_3-snap.1386-T1
Valid prediction for Augustus_model.g4386.t1
Valid prediction for Augustus_model.g4371.t1
Valid prediction for snap_scaffold_3-snap.1400-T1
Valid prediction for GlimmerHMM_glimmerT_6715-T1
Valid prediction for snap_scaffold_3-snap.1396-T1
Couldn't classify 101027, 102256
Sorry, prediction Augustus_model.g4382.t1 fails validation.
(TCG)	 AC	101027-102256	GT	TGG
(CAT)	 AG	102445-102607	GT	AGG
(GCT)	 AG	102693-102789	GT	AGG
(GTG)	 AG	102958-103035	GT	AGG
(ATC)	 AG	103135-103350	GT	ACG
(ATG)	 AG	103463-103634	GT	AGG
(AGA)	 AG	103899-104091	GT	GAG
(ATA)	 AG	104307-104372	GT	GTG
(GGA)	 AG	104516-104675	GT	TGG
(AAC)	 AG	104951-105082	GT	CGG
(GAC)	 AG	105370-105498	GT	AGG
(GGC)	 AG	105678-105701	GT	TTG
(GCC)	 AG	106117-106194	GT	AAG
(TTC)	 AG	106995-107065	GT	CTG
(GTA)	 AG	107262-107328	GT	AGG
(GCT)	 AG	107438-107616	GT	AGG
(CTA)	 AG	107957-108055	GT	AGG
(GTA)	 AG	108230-108394	GT	AAG
(AGG)	 AG	108544-108655	GT	CAG
(GGC)	 AG	108750-108827	GT	AGG
(GGT)	 AG	108993-109129	GT	CTG
(TAA)	 AG	109233-109388	GT	AGG
(TCC)	 AG	109475-109592	GT	AGG
(GCG)	 AG	109732-109889	GT	AGG
(GTT)	 AG	110003-110125	GT	GGG
(CTG)	 AG	110246-110422	GT	GAG
(GAG)	 AG	110517-110562	GT	AGG
(GTC)	 AG	110964-111025	GT	AGG
(TAC)	 AG	111105-111254	GT	AGG
(GAT)	 AG	111751-111847	GT	AGG
(GCT)	 AG	112043-112081	TG	AAT
-recovered Augustus_model.g4382.t1, initial, 103463, 103634
-recovered Augustus_model.g4382.t1, terminal, 112043, 112081
-recovered Augustus_model.g4382.t1, internal, 102445, 102607
-recovered Augustus_model.g4382.t1, internal, 102693, 102789
-recovered Augustus_model.g4382.t1, internal, 102958, 103035
-recovered Augustus_model.g4382.t1, internal, 103135, 103350
-recovered Augustus_model.g4382.t1, internal, 103463, 103634
-recovered Augustus_model.g4382.t1, internal, 103899, 104091
-recovered Augustus_model.g4382.t1, internal, 104307, 104372
-recovered Augustus_model.g4382.t1, internal, 104516, 104675
-recovered Augustus_model.g4382.t1, internal, 104951, 105082
-recovered Augustus_model.g4382.t1, internal, 105370, 105498
-recovered Augustus_model.g4382.t1, internal, 105678, 105701
-recovered Augustus_model.g4382.t1, internal, 106117, 106194
-recovered Augustus_model.g4382.t1, internal, 106995, 107065
-recovered Augustus_model.g4382.t1, internal, 107262, 107328
-recovered Augustus_model.g4382.t1, internal, 107438, 107616
-recovered Augustus_model.g4382.t1, internal, 107957, 108055
-recovered Augustus_model.g4382.t1, internal, 108230, 108394
-recovered Augustus_model.g4382.t1, internal, 108544, 108655
-recovered Augustus_model.g4382.t1, internal, 108750, 108827
-recovered Augustus_model.g4382.t1, internal, 108993, 109129
-recovered Augustus_model.g4382.t1, internal, 109233, 109388
-recovered Augustus_model.g4382.t1, internal, 109475, 109592
-recovered Augustus_model.g4382.t1, internal, 109732, 109889
-recovered Augustus_model.g4382.t1, internal, 110003, 110125
-recovered Augustus_model.g4382.t1, internal, 110246, 110422
-recovered Augustus_model.g4382.t1, internal, 110517, 110562
-recovered Augustus_model.g4382.t1, internal, 110964, 111025
-recovered Augustus_model.g4382.t1, internal, 111105, 111254
-recovered Augustus_model.g4382.t1, internal, 111751, 111847
Couldn't classify 103574, 103634
Couldn't classify 105370, 105426
Sorry, prediction pasa_asmbl_40138.p1 fails validation.
(AAG)	 GG	103574-103634	GT	AGG
(AGA)	 AG	103899-104091	GT	GAG
(ATA)	 AG	104307-104372	GT	GTG
(GGA)	 AG	104516-104675	GT	TGG
(AAC)	 AG	104951-105082	GT	CGG
(GAC)	 AG	105370-105426	AC	TGA
-recovered pasa_asmbl_40138.p1, internal, 103899, 104091
-recovered pasa_asmbl_40138.p1, internal, 104307, 104372
-recovered pasa_asmbl_40138.p1, internal, 104516, 104675
-recovered pasa_asmbl_40138.p1, internal, 104951, 105082
Valid prediction for GlimmerHMM_glimmerT_6716-T1
Valid prediction for CodingQuarry_transcript_46196-T1
Valid prediction for GlimmerHMM_glimmerT_6739-T1
Valid prediction for snap_scaffold_3-snap.1380-T1
Valid prediction for Augustus_model.g4368.t1
Valid prediction for snap_scaffold_3-snap.1403-T1
Valid prediction for Augustus_model.g4380.t1
Valid prediction for snap_scaffold_3-snap.1364-T1
Valid prediction for snap_scaffold_3-snap.1389-T1
Valid prediction for snap_scaffold_3-snap.1399-T1
Couldn't classify 92695, 92729
Sorry, prediction pasa_asmbl_40134.p1 fails validation.
(GGA)	 AC	92695-92729	GT	AGG
(GTT)	 AG	92831-93038	GT	GGG
(GAC)	 AG	93149-93231	GT	AAG
(ACA)	 AG	93326-93410	GT	ACG
(ATC)	 AG	93515-93748	GT	TCG
(TGG)	 AG	93895-93988	GT	AGG
(CCA)	 AG	94072-94188	GT	TGG
(CCA)	 AG	94274-94347	GT	AGG
(AAC)	 AG	94444-94536	GT	AGG
(GAT)	 AG	94661-94913	GT	CAG
(GTG)	 AG	94996-95072	TG	GAT
-recovered pasa_asmbl_40134.p1, terminal, 94996, 95072
-recovered pasa_asmbl_40134.p1, internal, 92831, 93038
-recovered pasa_asmbl_40134.p1, internal, 93149, 93231
-recovered pasa_asmbl_40134.p1, internal, 93326, 93410
-recovered pasa_asmbl_40134.p1, internal, 93515, 93748
-recovered pasa_asmbl_40134.p1, internal, 93895, 93988
-recovered pasa_asmbl_40134.p1, internal, 94072, 94188
-recovered pasa_asmbl_40134.p1, internal, 94274, 94347
-recovered pasa_asmbl_40134.p1, internal, 94444, 94536
-recovered pasa_asmbl_40134.p1, internal, 94661, 94913
Valid prediction for snap_scaffold_3-snap.1375-T1
Valid prediction for CodingQuarry_transcript_46195-T1
Valid prediction for snap_scaffold_3-snap.1405-T1
Valid prediction for HiQ_model.g4373.t1
Valid prediction for GlimmerHMM_glimmerT_6733-T1
Valid prediction for snap_scaffold_3-snap.1401-T1
Valid prediction for snap_scaffold_3-snap.1387-T1
Valid prediction for GlimmerHMM_glimmerT_6745-T1
Valid prediction for GlimmerHMM_glimmerT_6718-T1
Valid prediction for snap_scaffold_3-snap.1369-T1
Valid prediction for CodingQuarry_transcript_46198-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g4390.t1
Couldn't classify 67845, 67871
Sorry, prediction pasa_asmbl_39758.p1 fails validation.
(ATG)	 CC	58816-58839	GT	AGG
(GAG)	 AG	59083-59160	GT	AGG
(CTG)	 AG	60896-61055	GT	GGG
(AGC)	 AG	62820-62941	GT	AGG
(AAC)	 AG	63415-63480	GT	AGG
(GAG)	 AG	63644-63787	GT	AGG
(GCT)	 AG	65557-65667	GT	AGG
(CAT)	 AG	66923-67021	GT	AGG
(TAT)	 AG	67267-67387	GT	AGG
(AGT)	 AG	67503-67642	GT	AGG
(GGG)	 AG	67845-67871	GT	CGG
-recovered pasa_asmbl_39758.p1, initial, 58816, 58839
-recovered pasa_asmbl_39758.p1, internal, 59083, 59160
-recovered pasa_asmbl_39758.p1, internal, 60896, 61055
-recovered pasa_asmbl_39758.p1, internal, 62820, 62941
-recovered pasa_asmbl_39758.p1, internal, 63415, 63480
-recovered pasa_asmbl_39758.p1, internal, 63644, 63787
-recovered pasa_asmbl_39758.p1, internal, 65557, 65667
-recovered pasa_asmbl_39758.p1, internal, 66923, 67021
-recovered pasa_asmbl_39758.p1, internal, 67267, 67387
-recovered pasa_asmbl_39758.p1, internal, 67503, 67642
-recovered pasa_asmbl_39758.p1, internal, 67845, 67871
Valid prediction for GlimmerHMM_glimmerT_6749-T1
Valid prediction for snap_scaffold_3-snap.1374-T1
Valid prediction for GlimmerHMM_glimmerT_6719-T1
Valid prediction for snap_scaffold_3-snap.1406-T1
Valid prediction for snap_scaffold_3-snap.1376-T1
Valid prediction for snap_scaffold_3-snap.1404-T1
Valid prediction for snap_scaffold_3-snap.1377-T1
Valid prediction for Augustus_model.g4397.t1
Valid prediction for GlimmerHMM_glimmerT_6743-T1
Valid prediction for snap_scaffold_3-snap.1397-T1
Valid prediction for snap_scaffold_3-snap.1379-T1
Valid prediction for HiQ_model.g4391.t1
Valid prediction for snap_scaffold_3-snap.1373-T1
Couldn't classify 190883, 190970
Sorry, prediction pasa_asmbl_38948.p1 fails validation.
(ATG)	 TC	190325-190381	GT	CAG
(AGT)	 AG	190498-190706	GT	AGG
(ACT)	 AG	190883-190970	AG	AGA
-recovered pasa_asmbl_38948.p1, initial, 190325, 190381
-recovered pasa_asmbl_38948.p1, internal, 190498, 190706
Valid prediction for Augustus_model.g4381.t1
Valid prediction for GlimmerHMM_glimmerT_6726-T1
Valid prediction for Augustus_model.g4398.t1
Couldn't classify 69223, 70644
Sorry, prediction pasa_asmbl_38950.p1 fails validation.
(TTC)	 GC	69223-70644	TG	AGT
Valid prediction for GlimmerHMM_glimmerT_6724-T1
Valid prediction for GlimmerHMM_glimmerT_6735-T1
Valid prediction for snap_scaffold_3-snap.1385-T1
Valid prediction for snap_scaffold_3-snap.1392-T1
Valid prediction for snap_scaffold_3-snap.1371-T1
Valid prediction for GlimmerHMM_glimmerT_6748-T1
Valid prediction for snap_scaffold_3-snap.1388-T1
Valid prediction for snap_scaffold_3-snap.1382-T1
Valid prediction for Augustus_model.g4393.t1
Valid prediction for GlimmerHMM_glimmerT_6723-T1
Valid prediction for GlimmerHMM_glimmerT_6741-T1
Valid prediction for Augustus_model.g4387.t1
Valid prediction for snap_scaffold_3-snap.1402-T1
Valid prediction for GlimmerHMM_glimmerT_6738-T1
Valid prediction for snap_scaffold_3-snap.1390-T1
Valid prediction for Augustus_model.g4378.t1
Valid prediction for Augustus_model.g4388.t1
Valid prediction for GlimmerHMM_glimmerT_6737-T1
Valid prediction for snap_scaffold_3-snap.1393-T1
Valid prediction for snap_scaffold_3-snap.1363-T1
Couldn't classify 13344, 14225
Sorry, prediction pasa_asmbl_40147.p1 fails validation.
(ATG)	 GT	13344-14225	GA	TCG
Valid prediction for GlimmerHMM_glimmerT_6747-T1
Valid prediction for GlimmerHMM_glimmerT_6722-T1
Valid prediction for GlimmerHMM_glimmerT_6717-T1
Valid prediction for GlimmerHMM_glimmerT_6720-T1
Valid prediction for GlimmerHMM_glimmerT_6744-T1
Valid prediction for Augustus_model.g4374.t1
Valid prediction for GlimmerHMM_glimmerT_6734-T1
Valid prediction for snap_scaffold_3-snap.1367-T1
Couldn't classify 174009, 174560
Sorry, prediction pasa_asmbl_38949.p1 fails validation.
(GCT)	 GG	174009-174560	GA	GGG
Valid prediction for snap_scaffold_3-snap.1383-T1
Valid prediction for GlimmerHMM_glimmerT_6740-T1
Valid prediction for Augustus_model.g4377.t1
Valid prediction for Augustus_model.g4376.t1
Valid prediction for snap_scaffold_3-snap.1365-T1
Valid prediction for Augustus_model.g4395.t1
Valid prediction for GlimmerHMM_glimmerT_6746-T1
Valid prediction for snap_scaffold_3-snap.1395-T1
Valid prediction for Augustus_model.g4392.t1
Valid prediction for Augustus_model.g4379.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12280, rend_intergenic: 8957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17200, rend_intergenic: 13976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27546, rend_intergenic: 18164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53380, rend_intergenic: 39151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69672, rend_intergenic: 67655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81878, rend_intergenic: 69785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90079, rend_intergenic: 87175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112081, rend_intergenic: 101023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113141, rend_intergenic: 112836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118665, rend_intergenic: 113936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139412, rend_intergenic: 134234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142871, rend_intergenic: 139738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161399, rend_intergenic: 160083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162516, rend_intergenic: 162027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169810, rend_intergenic: 162829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198898, rend_intergenic: 170009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200468, rend_intergenic: 199280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225333, rend_intergenic: 223302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226472, rend_intergenic: 225372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 174013, rend_intergenic: 174010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230726
-exon list size: 635


building trellis

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9.7    
9.9    
10.0    
10.2    
10.4    
10.5    
10.7    
10.8    
11.0    
11.1    
11.3    
11.5    
11.6    
11.8    
11.9    
12.1    
12.2    
12.4    
12.6    
12.7    
12.9    
13.0    
13.2    
13.3    
13.5    
13.7    
13.8    
14.0    
14.1    
14.3    
14.4    
14.6    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.9    
16.0    
16.2    
16.3    
16.5    
16.6    
16.8    
17.0    
17.1    
17.3    
17.4    
17.6    
17.7    
17.9    
18.1    
18.2    
18.4    
18.5    
18.7    
18.8    
19.0    
19.2    
19.3    
19.5    
19.6    
19.8    
19.9    
20.1    
20.3    
20.4    
20.6    
20.7    
20.9    
21.0    
21.2    
21.4    
21.5    
21.7    
21.8    
22.0    
22.1    
22.3    
22.4    
22.6    
22.8    
22.9    
23.1    
23.2    
23.4    
23.5    
23.7    
23.9    
24.0    
24.2    
24.3    
24.5    
24.6    
24.8    
25.0    
25.1    
25.3    
25.4    
25.6    
25.7    
25.9    
26.1    
26.2    
26.4    
26.5    
26.7    
26.8    
27.0    
27.2    
27.3    
27.5    
27.6    
27.8    
27.9    
28.1    
28.3    
28.4    
28.6    
28.7    
28.9    
29.0    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.5    
30.6    
30.8    
30.9    
31.1    
31.2    
31.4    
31.6    
31.7    
31.9    
32.0    
32.2    
32.3    
32.5    
32.7    
32.8    
33.0    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.2    
34.4    
34.5    
34.7    
34.9    
35.0    
35.2    
35.3    
35.5    
35.6    
35.8    
35.9    
36.1    
36.3    
36.4    
36.6    
36.7    
36.9    
37.0    
37.2    
37.4    
37.5    
37.7    
37.8    
38.0    
38.1    
38.3    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.4    
39.6    
39.7    
39.9    
40.0    
40.2    
40.3    
40.5    
40.7    
40.8    
41.0    
41.1    
41.3    
41.4    
41.6    
41.8    
41.9    
42.1    
42.2    
42.4    
42.5    
42.7    
42.9    
43.0    
43.2    
43.3    
43.5    
43.6    
43.8    
44.0    
44.1    
44.3    
44.4    
44.6    
44.7    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
46.9    
47.1    
47.3    
47.4    
47.6    
47.7    
47.9    
48.0    
48.2    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.8    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.3    
55.4    
55.6    
55.7    
55.9    
56.0    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.1    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.4    
58.6    
58.7    
58.9    
59.0    
59.2    
59.3    
59.5    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
63.0    
63.1    
63.3    
63.4    
63.6    
63.7    
63.9    
64.1    
64.2    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.3    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.3    
67.5    
67.7    
67.8    
68.0    
68.1    
68.3    
68.4    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.9    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.1    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.1    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.5    
78.6    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.3    
82.4    
82.6    
82.7    
82.9    
83.0    
83.2    
83.4    
83.5    
83.7    
83.8    
84.0    
84.1    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.5    
86.7    
86.8    
87.0    
87.1    
87.3    
87.4    
87.6    
87.8    
87.9    
88.1    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.0    
94.2    
94.3    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.7    
96.9    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
98.0    
98.1    
98.3    
98.4    
98.6    
98.7    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 12280, rend_intergenic: 8957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17200, rend_intergenic: 13976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27546, rend_intergenic: 18164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53380, rend_intergenic: 39151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69672, rend_intergenic: 67655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81878, rend_intergenic: 69785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90079, rend_intergenic: 87175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112081, rend_intergenic: 101023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113141, rend_intergenic: 112836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118665, rend_intergenic: 113936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139412, rend_intergenic: 134234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142871, rend_intergenic: 139738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161399, rend_intergenic: 160083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162516, rend_intergenic: 162027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169810, rend_intergenic: 162829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198898, rend_intergenic: 170009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200468, rend_intergenic: 199280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225333, rend_intergenic: 223302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226472, rend_intergenic: 225372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 174013, rend_intergenic: 174010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support