-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_203232-364914

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.47-T1
Valid prediction for snap_scaffold_3-snap.69-T1
Valid prediction for snap_scaffold_3-snap.58-T1
Valid prediction for Augustus_model.g3825.t1
Valid prediction for Augustus_model.g3833.t1
Valid prediction for snap_scaffold_3-snap.54-T1
Valid prediction for Augustus_model.g3829.t1
Valid prediction for GlimmerHMM_glimmerT_5858-T1
Valid prediction for snap_scaffold_3-snap.64-T1
Valid prediction for GlimmerHMM_glimmerT_5864-T1
Valid prediction for snap_scaffold_3-snap.78-T1
Valid prediction for snap_scaffold_3-snap.50-T1
Valid prediction for snap_scaffold_3-snap.74-T1
Valid prediction for Augustus_model.g3822.t1
Valid prediction for snap_scaffold_3-snap.66-T1
Valid prediction for GlimmerHMM_glimmerT_5845-T1
Valid prediction for snap_scaffold_3-snap.55-T1
Valid prediction for snap_scaffold_3-snap.63-T1
Valid prediction for snap_scaffold_3-snap.83-T1
Valid prediction for snap_scaffold_3-snap.77-T1
Valid prediction for Augustus_model.g3830.t1
Valid prediction for GlimmerHMM_glimmerT_5857-T1
Valid prediction for GlimmerHMM_glimmerT_5847-T1
Valid prediction for snap_scaffold_3-snap.60-T1
Valid prediction for snap_scaffold_3-snap.52-T1
Valid prediction for snap_scaffold_3-snap.43-T1
Valid prediction for snap_scaffold_3-snap.61-T1
Valid prediction for Augustus_model.g3834.t1
Valid prediction for GlimmerHMM_glimmerT_5849-T1
Valid prediction for snap_scaffold_3-snap.86-T1
Valid prediction for snap_scaffold_3-snap.87-T1
Valid prediction for snap_scaffold_3-snap.56-T1
Valid prediction for snap_scaffold_3-snap.48-T1
Valid prediction for snap_scaffold_3-snap.44-T1
Valid prediction for GlimmerHMM_glimmerT_5853-T1
Valid prediction for Augustus_model.g3827.t1
Valid prediction for snap_scaffold_3-snap.80-T1
Valid prediction for snap_scaffold_3-snap.71-T1
Valid prediction for GlimmerHMM_glimmerT_5863-T1
Valid prediction for GlimmerHMM_glimmerT_5844-T1
Valid prediction for snap_scaffold_3-snap.70-T1
Valid prediction for GlimmerHMM_glimmerT_5850-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.85-T1
Valid prediction for snap_scaffold_3-snap.75-T1
Valid prediction for snap_scaffold_3-snap.73-T1
Valid prediction for GlimmerHMM_glimmerT_5852-T1
Valid prediction for snap_scaffold_3-snap.62-T1
Valid prediction for snap_scaffold_3-snap.49-T1
Valid prediction for snap_scaffold_3-snap.82-T1
Valid prediction for snap_scaffold_3-snap.72-T1
Valid prediction for GlimmerHMM_glimmerT_5856-T1
Valid prediction for snap_scaffold_3-snap.81-T1
Valid prediction for snap_scaffold_3-snap.68-T1
Valid prediction for GlimmerHMM_glimmerT_5860-T1
Valid prediction for snap_scaffold_3-snap.59-T1
Valid prediction for GlimmerHMM_glimmerT_5854-T1
Valid prediction for snap_scaffold_3-snap.76-T1
Valid prediction for Augustus_model.g3826.t1
Valid prediction for snap_scaffold_3-snap.57-T1
Valid prediction for snap_scaffold_3-snap.79-T1
Valid prediction for snap_scaffold_3-snap.67-T1
Valid prediction for Augustus_model.g3831.t1
Valid prediction for GlimmerHMM_glimmerT_5861-T1
Valid prediction for snap_scaffold_3-snap.84-T1
Valid prediction for GlimmerHMM_glimmerT_5859-T1
Valid prediction for GlimmerHMM_glimmerT_5855-T1
Valid prediction for snap_scaffold_3-snap.51-T1
Valid prediction for GlimmerHMM_glimmerT_5848-T1
Valid prediction for snap_scaffold_3-snap.46-T1
Valid prediction for GlimmerHMM_glimmerT_5865-T1
Valid prediction for Augustus_model.g3832.t1
Valid prediction for Augustus_model.g3824.t1
Valid prediction for GlimmerHMM_glimmerT_5862-T1
Valid prediction for GlimmerHMM_glimmerT_5846-T1
Valid prediction for GlimmerHMM_glimmerT_5851-T1
Valid prediction for snap_scaffold_3-snap.65-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_3-snap.42-T1
Valid prediction for Augustus_model.g3823.t1
Valid prediction for Augustus_model.g3828.t1
Valid prediction for snap_scaffold_3-snap.45-T1
Valid prediction for snap_scaffold_3-snap.53-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6552, rend_intergenic: 2112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29139, rend_intergenic: 23451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33500, rend_intergenic: 30462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38441, rend_intergenic: 34700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44774, rend_intergenic: 39734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47791, rend_intergenic: 45353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67344, rend_intergenic: 62551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78540, rend_intergenic: 73825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88016, rend_intergenic: 85874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91634, rend_intergenic: 89171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94942, rend_intergenic: 92810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113866, rend_intergenic: 113559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128212, rend_intergenic: 120254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133652, rend_intergenic: 131907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136560, rend_intergenic: 133906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143171, rend_intergenic: 137362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143840, rend_intergenic: 143839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149440, rend_intergenic: 144844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161683
-exon list size: 286


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.9    
5.2    
5.6    
5.9    
6.2    
6.6    
6.9    
7.3    
7.6    
8.0    
8.3    
8.7    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.5    
21.9    
22.2    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.1    
35.4    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.7    
43.1    
43.4    
43.8    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.2    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.8    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.2    
56.6    
56.9    
57.3    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.6    
64.9    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.8    
78.1    
78.5    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.3    
91.7    
92.0    
92.4    
92.7    
93.1    
93.4    
93.8    
94.1    
94.4    
94.8    
95.1    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 6552, rend_intergenic: 2112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29139, rend_intergenic: 23451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33500, rend_intergenic: 30462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38441, rend_intergenic: 34700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44774, rend_intergenic: 39734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47791, rend_intergenic: 45353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67344, rend_intergenic: 62551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78540, rend_intergenic: 73825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88016, rend_intergenic: 85874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91634, rend_intergenic: 89171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94942, rend_intergenic: 92810  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113866, rend_intergenic: 113559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128212, rend_intergenic: 120254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133652, rend_intergenic: 131907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136560, rend_intergenic: 133906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143171, rend_intergenic: 137362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143840, rend_intergenic: 143839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149440, rend_intergenic: 144844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support