-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_16582304-16712684

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_8053-T1
Valid prediction for Augustus_model.g5320.t1
Valid prediction for GlimmerHMM_glimmerT_8048-T1
Valid prediction for GlimmerHMM_glimmerT_8049-T1
Valid prediction for Augustus_model.g5324.t1
Valid prediction for snap_scaffold_3-snap.3199-T1
Valid prediction for snap_scaffold_3-snap.3205-T1
Valid prediction for snap_scaffold_3-snap.3201-T1
Valid prediction for GlimmerHMM_glimmerT_8050-T1
Valid prediction for GlimmerHMM_glimmerT_8051-T1
Valid prediction for snap_scaffold_3-snap.3193-T1
Valid prediction for GlimmerHMM_glimmerT_8054-T1
Valid prediction for snap_scaffold_3-snap.3204-T1
Valid prediction for GlimmerHMM_glimmerT_8045-T1
Valid prediction for snap_scaffold_3-snap.3197-T1
Valid prediction for snap_scaffold_3-snap.3194-T1
Valid prediction for snap_scaffold_3-snap.3195-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.3202-T1
Valid prediction for GlimmerHMM_glimmerT_8055-T1
Valid prediction for GlimmerHMM_glimmerT_8056-T1
Valid prediction for snap_scaffold_3-snap.3200-T1
Valid prediction for Augustus_model.g5321.t1
Valid prediction for GlimmerHMM_glimmerT_8052-T1
Valid prediction for GlimmerHMM_glimmerT_8058-T1
Valid prediction for GlimmerHMM_glimmerT_8047-T1
Valid prediction for snap_scaffold_3-snap.3191-T1
Valid prediction for snap_scaffold_3-snap.3192-T1
Valid prediction for snap_scaffold_3-snap.3203-T1
Valid prediction for GlimmerHMM_glimmerT_8057-T1
Valid prediction for Augustus_model.g5319.t1
Valid prediction for snap_scaffold_3-snap.3198-T1
Valid prediction for Augustus_model.g5318.t1
Valid prediction for Augustus_model.g5317.t1
Valid prediction for GlimmerHMM_glimmerT_8046-T1
Valid prediction for snap_scaffold_3-snap.3196-T1
Valid prediction for Augustus_model.g5323.t1
Valid prediction for Augustus_model.g5322.t1
Valid prediction for Augustus_model.g5325.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18570, rend_intergenic: 17096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97944, rend_intergenic: 93798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107707, rend_intergenic: 103715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128308, rend_intergenic: 113748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 130381
-exon list size: 120


building trellis

0.8    
1.6    
2.5    
3.3    
4.1    
4.9    
5.7    
6.6    
7.4    
8.2    
9.0    
9.8    
10.7    
11.5    
12.3    
13.1    
13.9    
14.8    
15.6    
16.4    
17.2    
18.0    
18.9    
19.7    
20.5    
21.3    
22.1    
23.0    
23.8    
24.6    
25.4    
26.2    
27.0    
27.9    
28.7    
29.5    
30.3    
31.1    
32.0    
32.8    
33.6    
34.4    
35.2    
36.1    
36.9    
37.7    
38.5    
39.3    
40.2    
41.0    
41.8    
42.6    
43.4    
44.3    
45.1    
45.9    
46.7    
47.5    
48.4    
49.2    
50.0    
50.8    
51.6    
52.5    
53.3    
54.1    
54.9    
55.7    
56.6    
57.4    
58.2    
59.0    
59.8    
60.7    
61.5    
62.3    
63.1    
63.9    
64.8    
65.6    
66.4    
67.2    
68.0    
68.9    
69.7    
70.5    
71.3    
72.1    
73.0    
73.8    
74.6    
75.4    
76.2    
77.0    
77.9    
78.7    
79.5    
80.3    
81.1    
82.0    
82.8    
83.6    
84.4    
85.2    
86.1    
86.9    
87.7    
88.5    
89.3    
90.2    
91.0    
91.8    
92.6    
93.4    
94.3    
95.1    
95.9    
96.7    
97.5    
98.4    
99.2    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 18570, rend_intergenic: 17096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97944, rend_intergenic: 93798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107707, rend_intergenic: 103715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128308, rend_intergenic: 113748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support