-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_16017454-16228446

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_7974-T1
Valid prediction for GlimmerHMM_glimmerT_7976-T1
Valid prediction for GlimmerHMM_glimmerT_7968-T1
Couldn't classify 170906, 171029
Sorry, prediction pasa_asmbl_40613.p1 fails validation.
(AAT)	 CC	170906-171029	GT	AGG
(GCC)	 AG	171732-171867	GT	CGG
(GAA)	 AG	172141-172306	GT	AGG
(TCC)	 AG	172717-172974	GT	CGG
(AGC)	 AG	173215-173302	GT	TGG
(GTG)	 AG	173392-173531	GT	CTG
(AGG)	 AG	175162-175245	GT	AGG
(ACT)	 AG	175607-175747	GT	TGG
(GTG)	 AG	175860-175944	GT	AGG
(AGA)	 AG	176174-176294	GT	TCG
(AGA)	 AG	176472-176658	AA	AGA
-recovered pasa_asmbl_40613.p1, terminal, 176472, 176658
-recovered pasa_asmbl_40613.p1, internal, 171732, 171867
-recovered pasa_asmbl_40613.p1, internal, 172141, 172306
-recovered pasa_asmbl_40613.p1, internal, 172717, 172974
-recovered pasa_asmbl_40613.p1, internal, 173215, 173302
-recovered pasa_asmbl_40613.p1, internal, 173392, 173531
-recovered pasa_asmbl_40613.p1, internal, 175162, 175245
-recovered pasa_asmbl_40613.p1, internal, 175607, 175747
-recovered pasa_asmbl_40613.p1, internal, 175860, 175944
-recovered pasa_asmbl_40613.p1, internal, 176174, 176294
Valid prediction for snap_scaffold_3-snap.3067-T1
Valid prediction for GlimmerHMM_glimmerT_7975-T1
Valid prediction for snap_scaffold_3-snap.3075-T1
Couldn't classify 48876, 49124
Sorry, prediction pasa_asmbl_40603.p1 fails validation.
(TCC)	 GC	48876-49124	GT	AGG
(ATC)	 AG	49471-49640	GT	AGG
(GGC)	 AG	49853-50027	GT	AGG
(GTG)	 AG	50186-50479	GT	AGG
(TCC)	 AG	50694-50874	GT	CGG
(ATG)	 AG	51113-51234	GT	AGG
(TTC)	 AG	51326-51456	GT	GCG
(GAT)	 AG	51719-51836	GT	AGG
(TTG)	 AG	52123-52215	GT	AAG
(ACG)	 AG	52685-52882	CC	AAC
-recovered pasa_asmbl_40603.p1, initial, 51113, 51234
-recovered pasa_asmbl_40603.p1, terminal, 52685, 52882
-recovered pasa_asmbl_40603.p1, internal, 49471, 49640
-recovered pasa_asmbl_40603.p1, internal, 49853, 50027
-recovered pasa_asmbl_40603.p1, internal, 50186, 50479
-recovered pasa_asmbl_40603.p1, internal, 50694, 50874
-recovered pasa_asmbl_40603.p1, internal, 51113, 51234
-recovered pasa_asmbl_40603.p1, internal, 51326, 51456
-recovered pasa_asmbl_40603.p1, internal, 51719, 51836
-recovered pasa_asmbl_40603.p1, internal, 52123, 52215
Valid prediction for Augustus_model.g5275.t1
Valid prediction for GlimmerHMM_glimmerT_7984-T1
Valid prediction for Augustus_model.g5262.t1
Valid prediction for snap_scaffold_3-snap.3098-T1
Valid prediction for snap_scaffold_3-snap.3090-T1
Valid prediction for pasa_asmbl_40596.p2
Valid prediction for GlimmerHMM_glimmerT_7963-T1
Couldn't classify 168933, 169051
Couldn't classify 169436, 169591
Sorry, prediction pasa_asmbl_40611.p1 fails validation.
(GAG)	 AC	168933-169051	GT	AGG
(GCC)	 AG	169139-169244	GT	AGG
(AGT)	 AG	169436-169591	GT	ACG
-recovered pasa_asmbl_40611.p1, internal, 169139, 169244
-recovered pasa_asmbl_40611.p1, internal, 169436, 169591
Valid prediction for GlimmerHMM_glimmerT_7983-T1
Valid prediction for snap_scaffold_3-snap.3077-T1
Valid prediction for snap_scaffold_3-snap.3099-T1
Valid prediction for Augustus_model.g5273.t1
Valid prediction for Augustus_model.g5268.t1
Valid prediction for snap_scaffold_3-snap.3059-T1
Valid prediction for Augustus_model.g5276.t1
Valid prediction for Augustus_model.g5259.t1
Valid prediction for CodingQuarry_transcript_46404-T1
Valid prediction for snap_scaffold_3-snap.3087-T1
Valid prediction for snap_scaffold_3-snap.3101-T1
Valid prediction for GlimmerHMM_glimmerT_7972-T1
Valid prediction for GlimmerHMM_glimmerT_7980-T1
Valid prediction for GlimmerHMM_glimmerT_7965-T1
Valid prediction for GlimmerHMM_glimmerT_7973-T1
Valid prediction for GlimmerHMM_glimmerT_7982-T1
Valid prediction for snap_scaffold_3-snap.3103-T1
Valid prediction for GlimmerHMM_glimmerT_7967-T1
Valid prediction for Augustus_model.g5260.t1
Valid prediction for GlimmerHMM_glimmerT_7962-T1
Valid prediction for HiQ_model.g5267.t1
Couldn't classify 7029, 7272
Couldn't classify 7530, 8056
Sorry, prediction pasa_asmbl_40594.p1 fails validation.
(CAC)	 GC	7029-7272	GT	AGG
(GTA)	 AG	7530-8056	AA	CCA
Valid prediction for snap_scaffold_3-snap.3094-T1
Valid prediction for snap_scaffold_3-snap.3063-T1
Valid prediction for snap_scaffold_3-snap.3078-T1
Valid prediction for snap_scaffold_3-snap.3079-T1
Valid prediction for CodingQuarry_transcript_46398-T1
Valid prediction for snap_scaffold_3-snap.3097-T1
Couldn't classify 45577, 45743
Sorry, prediction pasa_asmbl_40602.p1 fails validation.
(ATG)	 AC	40427-40554	GT	GGG
(GAT)	 AG	43192-43366	GT	TGG
(CTG)	 AG	43611-43787	GT	TGG
(ACA)	 AG	44184-44326	GT	AGG
(TCT)	 AG	44473-44618	GT	AGG
(GGT)	 AG	45577-45743	TC	ACT
-recovered pasa_asmbl_40602.p1, initial, 40427, 40554
-recovered pasa_asmbl_40602.p1, internal, 43192, 43366
-recovered pasa_asmbl_40602.p1, internal, 43611, 43787
-recovered pasa_asmbl_40602.p1, internal, 44184, 44326
-recovered pasa_asmbl_40602.p1, internal, 44473, 44618
Valid prediction for GlimmerHMM_glimmerT_7959-T1
Valid prediction for snap_scaffold_3-snap.3072-T1
Couldn't classify 73798, 73950
Sorry, prediction pasa_asmbl_40608.p1 fails validation.
(ATG)	 CA	69200-69240	GT	AGG
(CGG)	 AG	70210-70317	GT	AGG
(GAA)	 AG	71633-71759	GT	AGG
(GAG)	 AG	73119-73280	GT	CGG
(GTG)	 AG	73798-73950	GT	GAG
-recovered pasa_asmbl_40608.p1, initial, 69200, 69240
-recovered pasa_asmbl_40608.p1, internal, 70210, 70317
-recovered pasa_asmbl_40608.p1, internal, 71633, 71759
-recovered pasa_asmbl_40608.p1, internal, 73119, 73280
-recovered pasa_asmbl_40608.p1, internal, 73798, 73950
Valid prediction for pasa_asmbl_40597.p1
Valid prediction for Augustus_model.g5278.t1
Valid prediction for CodingQuarry_transcript_46410-T1
Valid prediction for HiQ_model.g5263.t1
Valid prediction for GlimmerHMM_glimmerT_7961-T1
Valid prediction for GlimmerHMM_glimmerT_7991-T1
Valid prediction for Augustus_model.g5255.t1
Valid prediction for snap_scaffold_3-snap.3064-T1
Couldn't classify 77913, 78021
Sorry, prediction pasa_asmbl_40609.p1 fails validation.
(GAC)	 AG	77913-78021	GT	AGG
(GCC)	 AG	79313-79419	GT	AAG
(GAA)	 AG	79766-79864	TG	GAT
-recovered pasa_asmbl_40609.p1, terminal, 79766, 79864
-recovered pasa_asmbl_40609.p1, internal, 77913, 78021
-recovered pasa_asmbl_40609.p1, internal, 79313, 79419
Valid prediction for CodingQuarry_transcript_46397-T1
Valid prediction for snap_scaffold_3-snap.3076-T1
Couldn't classify 8186, 8833
Sorry, prediction pasa_asmbl_40595.p1 fails validation.
(TCT)	 TG	8186-8833	TT	GAT
Valid prediction for HiQ_model.g5257.t1
Valid prediction for Augustus_model.g5280.t1
Valid prediction for GlimmerHMM_glimmerT_7966-T1
Valid prediction for snap_scaffold_3-snap.3081-T1
Valid prediction for snap_scaffold_3-snap.3061-T1
Valid prediction for snap_scaffold_3-snap.3088-T1
Valid prediction for Augustus_model.g5261.t1
Valid prediction for snap_scaffold_3-snap.3093-T1
Valid prediction for pasa_asmbl_40604.p1
Valid prediction for snap_scaffold_3-snap.3066-T1
Valid prediction for Augustus_model.g5258.t1
Valid prediction for Augustus_model.g5266.t1
Valid prediction for Augustus_model.g5269.t1
Valid prediction for GlimmerHMM_glimmerT_7988-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_46407-T1
Valid prediction for GlimmerHMM_glimmerT_7986-T1
Valid prediction for CodingQuarry_transcript_46406-T1
Valid prediction for CodingQuarry_transcript_46403-T1
Valid prediction for snap_scaffold_3-snap.3073-T1
Valid prediction for snap_scaffold_3-snap.3095-T1
Valid prediction for GlimmerHMM_glimmerT_7979-T1
Valid prediction for HiQ_model.g5265.t1
Valid prediction for Augustus_model.g5272.t1
Couldn't classify 109734, 109932
Couldn't classify 110595, 110737
Sorry, prediction pasa_asmbl_39482.p1 fails validation.
(CCT)	 TG	109734-109932	GT	AGG
(ATG)	 AG	110076-110225	GT	AGG
(CGT)	 AG	110595-110737	CC	CAC
add_exon() Sorry, pasa_asmbl_39482.p1 110076-110225-initial-1 is invalid.
-recovered pasa_asmbl_39482.p1, initial, 110076, 110225
add_exon() Sorry, pasa_asmbl_39482.p1 110076-110225-terminal-1 is invalid.
-recovered pasa_asmbl_39482.p1, terminal, 110076, 110225
-recovered pasa_asmbl_39482.p1, internal, 110076, 110225
Valid prediction for CodingQuarry_transcript_46402-T1
Valid prediction for snap_scaffold_3-snap.3071-T1
Couldn't classify 49897, 49974
Couldn't classify 51251, 51298
Sorry, prediction pasa_asmbl_39489.p1 fails validation.
(GAG)	 GA	49897-49974	GT	TGG
(GTG)	 AG	50086-50177	GT	AGG
(ATC)	 AG	50257-50336	GT	AGG
(TGG)	 AG	50496-50623	GT	AGG
(ACC)	 AG	50972-51142	GT	AGG
(ATT)	 AG	51251-51298	GA	GAG
-recovered pasa_asmbl_39489.p1, terminal, 50086, 50177
-recovered pasa_asmbl_39489.p1, internal, 50086, 50177
-recovered pasa_asmbl_39489.p1, internal, 50257, 50336
-recovered pasa_asmbl_39489.p1, internal, 50496, 50623
-recovered pasa_asmbl_39489.p1, internal, 50972, 51142
Valid prediction for GlimmerHMM_glimmerT_7989-T1
Valid prediction for HiQ_model.g5271.t1
Valid prediction for CodingQuarry_transcript_46400-T1
Valid prediction for Augustus_model.g5279.t1
Valid prediction for HiQ_model.g5256.t1
Valid prediction for GlimmerHMM_glimmerT_7985-T1
Valid prediction for CodingQuarry_transcript_46396-T1
Valid prediction for snap_scaffold_3-snap.3074-T1
Valid prediction for snap_scaffold_3-snap.3062-T1
Valid prediction for CodingQuarry_transcript_46408-T1
Couldn't classify 46989, 47109
Couldn't classify 49295, 49376
Sorry, prediction pasa_asmbl_39490.p1 fails validation.
(AAC)	 CC	46989-47109	GT	AGG
(CCG)	 AG	47675-47832	GT	AGG
(GTG)	 AG	48008-48089	GT	GGG
(CGG)	 AG	48832-48951	GT	AGG
(ACT)	 AG	49035-49185	GT	GCG
(TCT)	 AG	49295-49376	CC	AGC
-recovered pasa_asmbl_39490.p1, internal, 47675, 47832
-recovered pasa_asmbl_39490.p1, internal, 48008, 48089
-recovered pasa_asmbl_39490.p1, internal, 48832, 48951
-recovered pasa_asmbl_39490.p1, internal, 49035, 49185
Valid prediction for snap_scaffold_3-snap.3065-T1
Valid prediction for HiQ_model.g5264.t1
Valid prediction for snap_scaffold_3-snap.3104-T1
Valid prediction for Augustus_model.g5274.t1
Valid prediction for snap_scaffold_3-snap.3100-T1
Valid prediction for snap_scaffold_3-snap.3096-T1
Valid prediction for snap_scaffold_3-snap.3068-T1
Valid prediction for snap_scaffold_3-snap.3084-T1
Valid prediction for GlimmerHMM_glimmerT_7960-T1
Valid prediction for CodingQuarry_transcript_46401-T1
Valid prediction for CodingQuarry_transcript_46409-T1
Valid prediction for Augustus_model.g5270.t1
Valid prediction for snap_scaffold_3-snap.3069-T1
Valid prediction for snap_scaffold_3-snap.3060-T1
Valid prediction for GlimmerHMM_glimmerT_7977-T1
Valid prediction for GlimmerHMM_glimmerT_7987-T1
Couldn't classify 87296, 88156
Sorry, prediction pasa_asmbl_39486.p1 fails validation.
(ATG)	 AA	80500-80598	GT	AGG
(GGA)	 AG	82614-82757	GT	TTG
(AAG)	 AG	82985-84010	GT	AGG
(CTG)	 AG	84109-84202	GT	GGG
(ATG)	 AG	84565-84831	GT	TGG
(ATA)	 AG	84951-85073	GT	TAG
(GTG)	 AG	85158-85246	GT	AGG
(GCC)	 AG	87296-88156	GA	GAG
-recovered pasa_asmbl_39486.p1, initial, 80500, 80598
add_exon() Sorry, pasa_asmbl_39486.p1 84565-84831-initial-1 is invalid.
-recovered pasa_asmbl_39486.p1, initial, 84565, 84831
-recovered pasa_asmbl_39486.p1, internal, 82614, 82757
-recovered pasa_asmbl_39486.p1, internal, 82985, 84010
-recovered pasa_asmbl_39486.p1, internal, 84109, 84202
-recovered pasa_asmbl_39486.p1, internal, 84565, 84831
-recovered pasa_asmbl_39486.p1, internal, 84951, 85073
-recovered pasa_asmbl_39486.p1, internal, 85158, 85246
Valid prediction for GlimmerHMM_glimmerT_7990-T1
Valid prediction for snap_scaffold_3-snap.3083-T1
Valid prediction for snap_scaffold_3-snap.3082-T1
Couldn't classify 92218, 92367
Sorry, prediction pasa_asmbl_39483.p1 fails validation.
(CCC)	 CC	92218-92367	GT	AGG
(AAC)	 AG	92822-92908	GT	AGG
(GCT)	 AG	93731-93885	GT	ATG
(GTT)	 AG	94086-94243	GT	AGG
(GTT)	 AG	94368-94492	GT	TGG
(GAT)	 AG	94661-94744	GT	AGG
(GTC)	 AG	94937-94978	TT	GAT
-recovered pasa_asmbl_39483.p1, terminal, 94937, 94978
-recovered pasa_asmbl_39483.p1, internal, 92822, 92908
-recovered pasa_asmbl_39483.p1, internal, 93731, 93885
-recovered pasa_asmbl_39483.p1, internal, 94086, 94243
-recovered pasa_asmbl_39483.p1, internal, 94368, 94492
-recovered pasa_asmbl_39483.p1, internal, 94661, 94744
Valid prediction for GlimmerHMM_glimmerT_7970-T1
Valid prediction for snap_scaffold_3-snap.3086-T1
Valid prediction for snap_scaffold_3-snap.3085-T1
Valid prediction for GlimmerHMM_glimmerT_7971-T1
Valid prediction for pasa_asmbl_39471.p1
Couldn't classify 104943, 105084
Couldn't classify 105493, 105537
Sorry, prediction pasa_asmbl_39786.p1 fails validation.
(ATC)	 TC	104943-105084	GT	TGG
(ACT)	 AG	105265-105380	GT	AGG
(AGC)	 AG	105493-105537	AC	CGA
-recovered pasa_asmbl_39786.p1, internal, 105265, 105380
Valid prediction for GlimmerHMM_glimmerT_7969-T1
Valid prediction for snap_scaffold_3-snap.3092-T1
Couldn't classify 111090, 111168
Sorry, prediction pasa_asmbl_39481.p1 fails validation.
(GGC)	 AC	111090-111168	GT	ACG
(GAG)	 AG	111320-111465	GT	AGG
(CAC)	 AG	111886-112000	GT	TGG
(GCT)	 AG	112392-112634	GT	CTG
(TAC)	 AG	112758-112899	GT	TGG
(CCC)	 AG	113229-113430	GC	AGG
-recovered pasa_asmbl_39481.p1, terminal, 113229, 113430
-recovered pasa_asmbl_39481.p1, internal, 111320, 111465
-recovered pasa_asmbl_39481.p1, internal, 111886, 112000
-recovered pasa_asmbl_39481.p1, internal, 112392, 112634
-recovered pasa_asmbl_39481.p1, internal, 112758, 112899
-recovered pasa_asmbl_39481.p1, internal, 113229, 113430
Valid prediction for snap_scaffold_3-snap.3089-T1
Valid prediction for pasa_asmbl_39474.p1
Valid prediction for CodingQuarry_transcript_46399-T1
Valid prediction for GlimmerHMM_glimmerT_7964-T1
Valid prediction for GlimmerHMM_glimmerT_7981-T1
Valid prediction for snap_scaffold_3-snap.3105-T1
Valid prediction for GlimmerHMM_glimmerT_7992-T1
Couldn't classify 51492, 51566
Sorry, prediction pasa_asmbl_39487.p1 fails validation.
(ATC)	 TC	51492-51566	GT	AGG
(GTG)	 AG	51682-51764	GT	TGG
(GAA)	 AG	51936-52010	GT	CGG
(GTT)	 AG	52482-52626	GC	GAG
-recovered pasa_asmbl_39487.p1, terminal, 52482, 52626
-recovered pasa_asmbl_39487.p1, internal, 51682, 51764
-recovered pasa_asmbl_39487.p1, internal, 51936, 52010
-recovered pasa_asmbl_39487.p1, internal, 52482, 52626
Valid prediction for GlimmerHMM_glimmerT_7978-T1
Valid prediction for Augustus_model.g5277.t1
Valid prediction for snap_scaffold_3-snap.3102-T1
Valid prediction for snap_scaffold_3-snap.3080-T1
Valid prediction for snap_scaffold_3-snap.3091-T1
Valid prediction for snap_scaffold_3-snap.3070-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 139205, rend_intergenic: 139202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29726, rend_intergenic: 28489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33752, rend_intergenic: 30517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53146, rend_intergenic: 34865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68383, rend_intergenic: 60682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102135, rend_intergenic: 93234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147871, rend_intergenic: 144933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155222, rend_intergenic: 148411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156550, rend_intergenic: 155453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165994, rend_intergenic: 158381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176658, rend_intergenic: 167605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186783, rend_intergenic: 177946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190202, rend_intergenic: 187012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195688, rend_intergenic: 192880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208349, rend_intergenic: 199498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210993
-exon list size: 593


building trellis

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20.5    
20.7    
20.8    
21.0    
21.2    
21.3    
21.5    
21.7    
21.8    
22.0    
22.2    
22.4    
22.5    
22.7    
22.9    
23.0    
23.2    
23.4    
23.5    
23.7    
23.9    
24.0    
24.2    
24.4    
24.5    
24.7    
24.9    
25.0    
25.2    
25.4    
25.5    
25.7    
25.9    
26.1    
26.2    
26.4    
26.6    
26.7    
26.9    
27.1    
27.2    
27.4    
27.6    
27.7    
27.9    
28.1    
28.2    
28.4    
28.6    
28.7    
28.9    
29.1    
29.2    
29.4    
29.6    
29.7    
29.9    
30.1    
30.3    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.1    
35.3    
35.5    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.6    
36.8    
37.0    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.8    
39.0    
39.2    
39.3    
39.5    
39.7    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.8    
41.0    
41.2    
41.3    
41.5    
41.7    
41.8    
42.0    
42.2    
42.4    
42.5    
42.7    
42.9    
43.0    
43.2    
43.4    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.5    
44.7    
44.9    
45.0    
45.2    
45.4    
45.5    
45.7    
45.9    
46.1    
46.2    
46.4    
46.6    
46.7    
46.9    
47.1    
47.2    
47.4    
47.6    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.7    
49.9    
50.1    
50.3    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.4    
52.6    
52.8    
52.9    
53.1    
53.3    
53.4    
53.6    
53.8    
53.9    
54.1    
54.3    
54.5    
54.6    
54.8    
55.0    
55.1    
55.3    
55.5    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.6    
56.8    
57.0    
57.1    
57.3    
57.5    
57.6    
57.8    
58.0    
58.2    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.3    
60.5    
60.7    
60.8    
61.0    
61.2    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.1    
70.3    
70.4    
70.6    
70.8    
70.9    
71.1    
71.3    
71.4    
71.6    
71.8    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
72.9    
73.1    
73.3    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.6    
76.8    
77.0    
77.1    
77.3    
77.5    
77.6    
77.8    
78.0    
78.2    
78.3    
78.5    
78.7    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.8    
80.0    
80.2    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.7    
81.8    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.5    
84.7    
84.9    
85.0    
85.2    
85.4    
85.5    
85.7    
85.9    
86.1    
86.2    
86.4    
86.6    
86.7    
86.9    
87.1    
87.2    
87.4    
87.6    
87.7    
87.9    
88.1    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.4    
92.6    
92.8    
92.9    
93.1    
93.3    
93.4    
93.6    
93.8    
93.9    
94.1    
94.3    
94.5    
94.6    
94.8    
95.0    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 35 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 139205, rend_intergenic: 139202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29726, rend_intergenic: 28489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33752, rend_intergenic: 30517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53146, rend_intergenic: 34865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68383, rend_intergenic: 60682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102135, rend_intergenic: 93234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147871, rend_intergenic: 144933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155222, rend_intergenic: 148411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156550, rend_intergenic: 155453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165994, rend_intergenic: 158381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176658, rend_intergenic: 167605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186783, rend_intergenic: 177946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190202, rend_intergenic: 187012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195688, rend_intergenic: 192880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208349, rend_intergenic: 199498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support