-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_3/scaffold_3_11356718-11621396

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g4795.t1
Couldn't classify 42767, 42892
Couldn't classify 45404, 45455
Sorry, prediction pasa_asmbl_40348.p1 fails validation.
(ACC)	 AA	42767-42892	GT	AGG
(GCA)	 AG	43129-43257	GT	CAG
(GGC)	 AG	43651-43781	GT	TAG
(TGT)	 AG	44073-44152	GT	TGG
(ACG)	 AG	44245-44332	GT	GGG
(CCA)	 AG	44564-44696	GT	AGG
(ACC)	 AG	44907-45007	GT	AGG
(GGA)	 AG	45125-45217	GT	AGG
(GAA)	 AG	45404-45455	GC	TGG
-recovered pasa_asmbl_40348.p1, internal, 43129, 43257
-recovered pasa_asmbl_40348.p1, internal, 43651, 43781
-recovered pasa_asmbl_40348.p1, internal, 44073, 44152
-recovered pasa_asmbl_40348.p1, internal, 44245, 44332
-recovered pasa_asmbl_40348.p1, internal, 44564, 44696
-recovered pasa_asmbl_40348.p1, internal, 44907, 45007
-recovered pasa_asmbl_40348.p1, internal, 45125, 45217
-recovered pasa_asmbl_40348.p1, internal, 45404, 45455
Valid prediction for Augustus_model.g4802.t1
Valid prediction for HiQ_model.g4799.t1
Valid prediction for snap_scaffold_3-snap.2291-T1
Valid prediction for snap_scaffold_3-snap.2289-T1
Valid prediction for snap_scaffold_3-snap.2293-T1
Valid prediction for snap_scaffold_3-snap.2254-T1
Valid prediction for GlimmerHMM_glimmerT_7367-T1
Valid prediction for snap_scaffold_3-snap.2266-T1
Valid prediction for snap_scaffold_3-snap.2258-T1
Valid prediction for pasa_asmbl_40359.p1
Valid prediction for snap_scaffold_3-snap.2277-T1
Valid prediction for snap_scaffold_3-snap.2275-T1
Valid prediction for GlimmerHMM_glimmerT_7370-T1
Valid prediction for snap_scaffold_3-snap.2290-T1
Valid prediction for snap_scaffold_3-snap.2262-T1
Valid prediction for CodingQuarry_transcript_46285-T1
Valid prediction for GlimmerHMM_glimmerT_7366-T1
Valid prediction for snap_scaffold_3-snap.2294-T1
Valid prediction for GlimmerHMM_glimmerT_7352-T1
Couldn't classify 166037, 166186
Sorry, prediction pasa_asmbl_40358.p2 fails validation.
(CCT)	 CC	166037-166186	GT	AGG
(GAG)	 AG	166288-166389	GT	AGG
(AAT)	 AG	166490-166789	GT	GAG
-recovered pasa_asmbl_40358.p2, terminal, 166490, 166789
-recovered pasa_asmbl_40358.p2, internal, 166288, 166389
-recovered pasa_asmbl_40358.p2, internal, 166490, 166789
Valid prediction for GlimmerHMM_glimmerT_7362-T1
Valid prediction for Augustus_model.g4796.t1
Valid prediction for GlimmerHMM_glimmerT_7372-T1
Valid prediction for GlimmerHMM_glimmerT_7365-T1
Valid prediction for GlimmerHMM_glimmerT_7354-T1
Valid prediction for GlimmerHMM_glimmerT_7363-T1
Valid prediction for GlimmerHMM_glimmerT_7371-T1
Valid prediction for GlimmerHMM_glimmerT_7349-T1
Valid prediction for snap_scaffold_3-snap.2280-T1
Valid prediction for snap_scaffold_3-snap.2283-T1
Valid prediction for Augustus_model.g4800.t1
Valid prediction for HiQ_model.g4797.t1
Valid prediction for pasa_asmbl_40351.p1
Valid prediction for HiQ_model.g4787.t1
Valid prediction for snap_scaffold_3-snap.2278-T1
Valid prediction for snap_scaffold_3-snap.2284-T1
Valid prediction for Augustus_model.g4786.t1
Valid prediction for snap_scaffold_3-snap.2276-T1
Valid prediction for snap_scaffold_3-snap.2282-T1
Valid prediction for snap_scaffold_3-snap.2260-T1
Valid prediction for GlimmerHMM_glimmerT_7348-T1
Valid prediction for GlimmerHMM_glimmerT_7374-T1
Valid prediction for snap_scaffold_3-snap.2287-T1
Valid prediction for snap_scaffold_3-snap.2259-T1
Valid prediction for Augustus_model.g4785.t1
Valid prediction for GlimmerHMM_glimmerT_7350-T1
Valid prediction for snap_scaffold_3-snap.2288-T1
Valid prediction for CodingQuarry_transcript_46284-T1
Valid prediction for snap_scaffold_3-snap.2265-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 180337, 180411
Sorry, prediction pasa_asmbl_39163.p1 fails validation.
(ATG)	 TC	179338-179587	GT	CGG
(GGA)	 AG	180133-180206	GT	TGG
(GAG)	 AG	180337-180411	AG	GGA
-recovered pasa_asmbl_39163.p1, initial, 179338, 179587
-recovered pasa_asmbl_39163.p1, internal, 180133, 180206
Couldn't classify 9917, 9960
Sorry, prediction pasa_asmbl_39173.p1 fails validation.
(CAG)	 TG	9917-9960	GT	AAG
(GAT)	 AG	10063-10223	GT	AGG
(CCT)	 AG	10319-10465	GT	AGG
(AGA)	 AG	10576-10667	GT	CGG
(GTT)	 AG	10942-11094	GT	AGG
(GTT)	 AG	11299-11568	GT	AGG
(ACG)	 AG	12001-12241	GT	AGG
(GGG)	 AG	13128-13307	GT	CAG
(GCT)	 AG	13404-13642	GT	ACG
(CTG)	 AG	14120-14299	GT	GGG
(GTG)	 AG	14436-14543	GT	TGG
(TTC)	 AG	14668-14793	GT	TTG
(CTC)	 AG	15110-15299	GT	GGG
(GTG)	 AG	16579-16652	CA	AGC
-recovered pasa_asmbl_39173.p1, terminal, 16579, 16652
-recovered pasa_asmbl_39173.p1, internal, 10063, 10223
-recovered pasa_asmbl_39173.p1, internal, 10319, 10465
-recovered pasa_asmbl_39173.p1, internal, 10576, 10667
-recovered pasa_asmbl_39173.p1, internal, 10942, 11094
-recovered pasa_asmbl_39173.p1, internal, 11299, 11568
-recovered pasa_asmbl_39173.p1, internal, 12001, 12241
-recovered pasa_asmbl_39173.p1, internal, 13128, 13307
-recovered pasa_asmbl_39173.p1, internal, 13404, 13642
-recovered pasa_asmbl_39173.p1, internal, 14120, 14299
-recovered pasa_asmbl_39173.p1, internal, 14436, 14543
-recovered pasa_asmbl_39173.p1, internal, 14668, 14793
-recovered pasa_asmbl_39173.p1, internal, 15110, 15299
Valid prediction for GlimmerHMM_glimmerT_7376-T1
Couldn't classify 150272, 150328
Couldn't classify 152430, 152582
Sorry, prediction pasa_asmbl_39170.p1 fails validation.
(CTG)	 CC	150272-150328	GT	AGG
(TCT)	 AG	150453-150638	GT	AGG
(GTC)	 AG	150799-150921	GT	CGG
(ATC)	 AG	151083-151217	GT	AGG
(AAG)	 AG	151820-151875	GT	AGG
(TGT)	 AG	151962-152066	GT	GGG
(GAT)	 AG	152251-152356	GT	TGG
(GAG)	 AG	152430-152582	CT	ACC
-recovered pasa_asmbl_39170.p1, internal, 150453, 150638
-recovered pasa_asmbl_39170.p1, internal, 150799, 150921
-recovered pasa_asmbl_39170.p1, internal, 151083, 151217
-recovered pasa_asmbl_39170.p1, internal, 151820, 151875
-recovered pasa_asmbl_39170.p1, internal, 151962, 152066
-recovered pasa_asmbl_39170.p1, internal, 152251, 152356
Valid prediction for snap_scaffold_3-snap.2274-T1
Valid prediction for snap_scaffold_3-snap.2264-T1
Valid prediction for snap_scaffold_3-snap.2273-T1
Valid prediction for Augustus_model.g4788.t1
Valid prediction for snap_scaffold_3-snap.2286-T1
Valid prediction for GlimmerHMM_glimmerT_7355-T1
Couldn't classify 180845, 182215
Sorry, prediction pasa_asmbl_39161.p1 fails validation.
(TTC)	 AG	180845-182215	CC	AGC
Valid prediction for CodingQuarry_transcript_46283-T1
Valid prediction for GlimmerHMM_glimmerT_7347-T1
Valid prediction for GlimmerHMM_glimmerT_7357-T1
Valid prediction for snap_scaffold_3-snap.2268-T1
Valid prediction for GlimmerHMM_glimmerT_7360-T1
Valid prediction for snap_scaffold_3-snap.2269-T1
Valid prediction for Augustus_model.g4804.t1
Valid prediction for snap_scaffold_3-snap.2263-T1
Valid prediction for snap_scaffold_3-snap.2292-T1
Valid prediction for Augustus_model.g4807.t1
Valid prediction for GlimmerHMM_glimmerT_7361-T1
Valid prediction for snap_scaffold_3-snap.2257-T1
Valid prediction for snap_scaffold_3-snap.2261-T1
Valid prediction for Augustus_model.g4792.t1
Couldn't classify 206608, 206878
Couldn't classify 208690, 209346
Sorry, prediction pasa_asmbl_39159.p1 fails validation.
(GTC)	 AC	206608-206878	GT	AGG
(ACA)	 AG	207083-207190	GT	CAG
(ACT)	 AG	207661-207847	GT	AAG
(GGC)	 AG	208480-208573	GT	TGG
(AAC)	 AG	208690-209346	CC	GAC
-recovered pasa_asmbl_39159.p1, internal, 207083, 207190
-recovered pasa_asmbl_39159.p1, internal, 207661, 207847
-recovered pasa_asmbl_39159.p1, internal, 208480, 208573
Couldn't classify 5127, 5220
Sorry, prediction pasa_asmbl_39764.p1 fails validation.
(ATG)	 AA	4469-4641	GT	CTG
(TCT)	 AG	4973-4999	GT	AGG
(GAA)	 AG	5127-5220	GA	TGG
-recovered pasa_asmbl_39764.p1, initial, 4469, 4641
-recovered pasa_asmbl_39764.p1, internal, 4973, 4999
Valid prediction for Augustus_model.g4789.t1
Valid prediction for GlimmerHMM_glimmerT_7356-T1
Couldn't classify 5514, 5609
Couldn't classify 6795, 6868
Sorry, prediction pasa_asmbl_39176.p1 fails validation.
(GCC)	 AT	5514-5609	GT	GGG
(GAT)	 AG	5744-5873	GT	AGG
(CTA)	 AG	6055-6183	GT	AGG
(ATG)	 AG	6434-6541	GT	GCG
(ACT)	 AG	6795-6868	GA	GTG
add_exon() Sorry, pasa_asmbl_39176.p1 6434-6541-initial-1 is invalid.
-recovered pasa_asmbl_39176.p1, initial, 6434, 6541
add_exon() Sorry, pasa_asmbl_39176.p1 5744-5873-terminal-3 is invalid.
-recovered pasa_asmbl_39176.p1, terminal, 5744, 5873
-recovered pasa_asmbl_39176.p1, internal, 5744, 5873
-recovered pasa_asmbl_39176.p1, internal, 6055, 6183
-recovered pasa_asmbl_39176.p1, internal, 6434, 6541
Couldn't classify 213047, 213335
Sorry, prediction pasa_asmbl_39156.p1 fails validation.
(TTT)	 GT	213047-213335	GT	TGG
(GTA)	 AG	213458-214515	CC	AAC
-recovered pasa_asmbl_39156.p1, terminal, 213458, 214515
Valid prediction for snap_scaffold_3-snap.2255-T1
Valid prediction for snap_scaffold_3-snap.2279-T1
Valid prediction for GlimmerHMM_glimmerT_7364-T1
Valid prediction for snap_scaffold_3-snap.2295-T1
Valid prediction for GlimmerHMM_glimmerT_7353-T1
Valid prediction for snap_scaffold_3-snap.2272-T1
Valid prediction for Augustus_model.g4790.t1
Valid prediction for GlimmerHMM_glimmerT_7368-T1
Valid prediction for Augustus_model.g4791.t1
Valid prediction for snap_scaffold_3-snap.2296-T1
Valid prediction for Augustus_model.g4784.t1
Valid prediction for snap_scaffold_3-snap.2256-T1
Valid prediction for GlimmerHMM_glimmerT_7375-T1
Valid prediction for GlimmerHMM_glimmerT_7359-T1
Couldn't classify 209317, 209466
Couldn't classify 211077, 212027
Sorry, prediction pasa_asmbl_39158.p1 fails validation.
(AGT)	 CA	209317-209466	GT	AGG
(GTG)	 AG	211077-212027	CA	GCC
Valid prediction for Augustus_model.g4806.t1
Valid prediction for Augustus_model.g4794.t1
Valid prediction for Augustus_model.g4805.t1
Couldn't classify 167862, 167986
Sorry, prediction pasa_asmbl_39168.p1 fails validation.
(CAA)	 GT	167862-167986	GT	CGG
(GCA)	 AG	168667-169311	GT	AGG
(GGA)	 AG	169386-169725	GT	AGG
(GTG)	 AG	170518-170726	GT	AGG
(GTT)	 AG	170873-171032	AG	AGA
-recovered pasa_asmbl_39168.p1, terminal, 170873, 171032
-recovered pasa_asmbl_39168.p1, internal, 168667, 169311
-recovered pasa_asmbl_39168.p1, internal, 169386, 169725
-recovered pasa_asmbl_39168.p1, internal, 170518, 170726
Valid prediction for snap_scaffold_3-snap.2297-T1
Valid prediction for Augustus_model.g4803.t1
Valid prediction for GlimmerHMM_glimmerT_7351-T1
Valid prediction for Augustus_model.g4801.t1
Valid prediction for GlimmerHMM_glimmerT_7377-T1
Valid prediction for Augustus_model.g4793.t1
Valid prediction for snap_scaffold_3-snap.2285-T1
Valid prediction for Augustus_model.g4798.t1
Couldn't classify 154979, 155058
Sorry, prediction pasa_asmbl_39169.p1 fails validation.
(CGC)	 AT	154979-155058	GT	AGG
(TGC)	 AG	156202-156351	GT	CAG
(CTG)	 AG	156470-156531	GT	GAG
(GCA)	 AG	157559-157687	GT	AGG
(AGC)	 AG	157836-157972	GT	TGG
(ATC)	 AG	158561-158616	GT	AAG
(ACT)	 AG	158712-158858	GT	ATG
(GTA)	 AG	158970-159102	GT	GAG
(GCA)	 AG	159230-159499	AA	AGA
add_exon() Sorry, pasa_asmbl_39169.p1 156470-156531-terminal-2 is invalid.
-recovered pasa_asmbl_39169.p1, terminal, 156470, 156531
-recovered pasa_asmbl_39169.p1, terminal, 159230, 159499
-recovered pasa_asmbl_39169.p1, internal, 156202, 156351
-recovered pasa_asmbl_39169.p1, internal, 156470, 156531
-recovered pasa_asmbl_39169.p1, internal, 157559, 157687
-recovered pasa_asmbl_39169.p1, internal, 157836, 157972
-recovered pasa_asmbl_39169.p1, internal, 158561, 158616
-recovered pasa_asmbl_39169.p1, internal, 158712, 158858
-recovered pasa_asmbl_39169.p1, internal, 158970, 159102
Couldn't classify 69600, 69921
Couldn't classify 71721, 71818
Sorry, prediction pasa_asmbl_39172.p2 fails validation.
(TAC)	 CC	69600-69921	GT	TGG
(AAT)	 AG	71721-71818	CG	CCC
Couldn't classify 85794, 86259
Sorry, prediction pasa_asmbl_39171.p1 fails validation.
(GAG)	 TA	85794-86259	GT	GGG
(CCT)	 AG	87001-87251	AA	AAA
-recovered pasa_asmbl_39171.p1, terminal, 87001, 87251
Couldn't classify 182423, 182713
Sorry, prediction pasa_asmbl_39160.p1 fails validation.
(AGA)	 AG	182423-182713	GT	AGG
(AAG)	 AG	182892-183131	GT	CTG
(CTG)	 AG	183514-183615	AG	GAA
-recovered pasa_asmbl_39160.p1, terminal, 183514, 183615
-recovered pasa_asmbl_39160.p1, internal, 182423, 182713
-recovered pasa_asmbl_39160.p1, internal, 182892, 183131
Valid prediction for GlimmerHMM_glimmerT_7358-T1
Valid prediction for snap_scaffold_3-snap.2281-T1
Valid prediction for snap_scaffold_3-snap.2271-T1
Valid prediction for snap_scaffold_3-snap.2267-T1
Valid prediction for GlimmerHMM_glimmerT_7369-T1
Valid prediction for snap_scaffold_3-snap.2270-T1
Valid prediction for GlimmerHMM_glimmerT_7373-T1
Couldn't classify 8249, 8256
Couldn't classify 9560, 9616
Sorry, prediction pasa_asmbl_39175.p1 fails validation.
(CAG)	 AG	8249-8256	GT	AAG
(GTT)	 AG	8702-8861	GT	TCG
(GTT)	 AG	9145-9339	GT	AGG
(CTG)	 AG	9560-9616	TG	TGT
-recovered pasa_asmbl_39175.p1, internal, 8249, 8256
-recovered pasa_asmbl_39175.p1, internal, 8702, 8861
-recovered pasa_asmbl_39175.p1, internal, 9145, 9339

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9676, rend_intergenic: 7208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32281, rend_intergenic: 19885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65245, rend_intergenic: 62788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67379, rend_intergenic: 66013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78234, rend_intergenic: 72296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123473, rend_intergenic: 108883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148705, rend_intergenic: 145632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159441, rend_intergenic: 153669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199379, rend_intergenic: 183836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209871, rend_intergenic: 205649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213980, rend_intergenic: 210729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224715, rend_intergenic: 220317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 264679
-exon list size: 474


building trellis

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53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.5    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.2    
99.4    
99.6    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9676, rend_intergenic: 7208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32281, rend_intergenic: 19885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65245, rend_intergenic: 62788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67379, rend_intergenic: 66013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78234, rend_intergenic: 72296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123473, rend_intergenic: 108883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148705, rend_intergenic: 145632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159441, rend_intergenic: 153669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199379, rend_intergenic: 183836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209871, rend_intergenic: 205649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213980, rend_intergenic: 210729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224715, rend_intergenic: 220317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15312
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support