-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2991

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 161
Couldn't classify 475, 570
Sorry, prediction snap_scaffold_2991-snap.1-T1 fails validation.
(GTT)	 AG	34-161	GT	AGG
(GTC)	 AG	475-570	GT	TGG
-recovered snap_scaffold_2991-snap.1-T1, internal, 34, 161
-recovered snap_scaffold_2991-snap.1-T1, internal, 475, 570
Couldn't classify 791, 852
Sorry, prediction GlimmerHMM_glimmerT_61752-T1 fails validation.
(ATG)	 AT	52-161	GT	AGG
(GTC)	 AG	475-570	GT	TGG
(CGT)	 AG	791-852	GT	CAG
-recovered GlimmerHMM_glimmerT_61752-T1, initial, 52, 161
-recovered GlimmerHMM_glimmerT_61752-T1, internal, 475, 570
-recovered GlimmerHMM_glimmerT_61752-T1, internal, 791, 852
Valid prediction for Augustus_model.g41047.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1086
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support