-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_298

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 47, 266
Couldn't classify 7168, 7240
Sorry, prediction snap_scaffold_298-snap.2-T1 fails validation.
(AGG)	 AG	47-266	GT	AGG
(TCT)	 AG	649-731	GT	GTG
(GTA)	 AG	2408-2496	GT	GAG
(CGT)	 AG	2885-2999	GT	AGG
(GCA)	 AG	3396-3581	GT	AGG
(GTC)	 AG	5253-5505	GT	AGG
(GGA)	 AG	6619-6715	GT	AGG
(AGG)	 AG	7168-7240	GT	AGG
-recovered snap_scaffold_298-snap.2-T1, terminal, 2408, 2496
-recovered snap_scaffold_298-snap.2-T1, internal, 47, 266
-recovered snap_scaffold_298-snap.2-T1, internal, 649, 731
-recovered snap_scaffold_298-snap.2-T1, internal, 2408, 2496
-recovered snap_scaffold_298-snap.2-T1, internal, 2885, 2999
-recovered snap_scaffold_298-snap.2-T1, internal, 3396, 3581
-recovered snap_scaffold_298-snap.2-T1, internal, 5253, 5505
-recovered snap_scaffold_298-snap.2-T1, internal, 6619, 6715
-recovered snap_scaffold_298-snap.2-T1, internal, 7168, 7240

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1251, 1304
Couldn't classify 3022, 3223
Sorry, prediction pasa_asmbl_38663.p1 fails validation.
(GCT)	 TC	1251-1304	GT	AGG
(GTG)	 AG	1719-1852	GT	ACG
(AGT)	 AG	3022-3223	AG	AGA
-recovered pasa_asmbl_38663.p1, internal, 1719, 1852
Couldn't classify 6232, 6397
Couldn't classify 8273, 8405
Sorry, prediction pasa_asmbl_38659.p1 fails validation.
(CTC)	 CC	6232-6397	GT	AGG
(TGA)	 AG	7704-7830	GT	CAG
(GGA)	 AG	8273-8405	GT	AGG
-recovered pasa_asmbl_38659.p1, internal, 7704, 7830
-recovered pasa_asmbl_38659.p1, internal, 8273, 8405
Couldn't classify 1181, 1304
Couldn't classify 8273, 8405
Sorry, prediction Augustus_model.g39832.t1 fails validation.
(CCC)	 AG	1181-1304	GT	AGG
(GTG)	 AG	1719-1852	GT	ACG
(AGT)	 AG	3022-3224	GT	GAG
(CCC)	 AG	6254-6397	GT	AGG
(TGA)	 AG	7704-7830	GT	CAG
(GGA)	 AG	8273-8405	GT	AGG
-recovered Augustus_model.g39832.t1, internal, 1181, 1304
-recovered Augustus_model.g39832.t1, internal, 1719, 1852
-recovered Augustus_model.g39832.t1, internal, 3022, 3224
-recovered Augustus_model.g39832.t1, internal, 6254, 6397
-recovered Augustus_model.g39832.t1, internal, 7704, 7830
-recovered Augustus_model.g39832.t1, internal, 8273, 8405
Couldn't classify 1181, 1304
Sorry, prediction GlimmerHMM_glimmerT_60154-T1 fails validation.
(CCC)	 AG	1181-1304	GT	AGG
(GTG)	 AG	1719-1852	GT	ACG
(AGT)	 AG	3022-3224	GT	GAG
(CCC)	 AG	6254-6397	GT	AGG
(TGA)	 AG	7704-7834	GT	GAG
-recovered GlimmerHMM_glimmerT_60154-T1, terminal, 7704, 7834
-recovered GlimmerHMM_glimmerT_60154-T1, internal, 1181, 1304
-recovered GlimmerHMM_glimmerT_60154-T1, internal, 1719, 1852
-recovered GlimmerHMM_glimmerT_60154-T1, internal, 3022, 3224
-recovered GlimmerHMM_glimmerT_60154-T1, internal, 6254, 6397
-recovered GlimmerHMM_glimmerT_60154-T1, internal, 7704, 7834
Valid prediction for CodingQuarry_transcript_43801-T1
Couldn't classify 1181, 1304
Couldn't classify 8273, 8405
Sorry, prediction snap_scaffold_298-snap.1-T1 fails validation.
(CCC)	 AG	1181-1304	GT	AGG
(GTG)	 AG	1719-1852	GT	ACG
(AGT)	 AG	3022-3224	GT	GAG
(CCC)	 AG	6254-6397	GT	AGG
(TGC)	 AG	6653-6670	GT	GGG
(TGA)	 AG	7704-7830	GT	CAG
(GGA)	 AG	8273-8405	GT	AGG
-recovered snap_scaffold_298-snap.1-T1, internal, 1181, 1304
-recovered snap_scaffold_298-snap.1-T1, internal, 1719, 1852
-recovered snap_scaffold_298-snap.1-T1, internal, 3022, 3224
-recovered snap_scaffold_298-snap.1-T1, internal, 6254, 6397
-recovered snap_scaffold_298-snap.1-T1, internal, 6653, 6670
-recovered snap_scaffold_298-snap.1-T1, internal, 7704, 7830
-recovered snap_scaffold_298-snap.1-T1, internal, 8273, 8405

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7265, rend_intergenic: 47  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8445
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7265, rend_intergenic: 47  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support