-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_296

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 293, 410
Couldn't classify 6296, 6535
Sorry, prediction snap_scaffold_296-snap.2-T1 fails validation.
(GGC)	 AG	293-410	GT	GTG
(GGC)	 AG	1027-1083	GT	CGG
(GTC)	 AG	1379-1522	GT	TTG
(GAA)	 AG	4140-4194	GT	CGG
(ACC)	 AG	6139-6279	GT	AGG
(GTG)	 AG	6296-6535	GT	AGG
add_exon() Sorry, snap_scaffold_296-snap.2-T1 6139-6279-terminal-1 is invalid.
-recovered snap_scaffold_296-snap.2-T1, terminal, 6139, 6279
-recovered snap_scaffold_296-snap.2-T1, internal, 293, 410
-recovered snap_scaffold_296-snap.2-T1, internal, 1027, 1083
-recovered snap_scaffold_296-snap.2-T1, internal, 1379, 1522
-recovered snap_scaffold_296-snap.2-T1, internal, 4140, 4194
-recovered snap_scaffold_296-snap.2-T1, internal, 6139, 6279
-recovered snap_scaffold_296-snap.2-T1, internal, 6296, 6535

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 815, 919
Sorry, prediction snap_scaffold_296-snap.3-T1 fails validation.
(TGA)	 AG	815-919	GT	ACG
(CAA)	 AG	1813-2290	GT	CAG
(AAG)	 AG	2345-2476	GA	GAG
-recovered snap_scaffold_296-snap.3-T1, terminal, 2345, 2476
-recovered snap_scaffold_296-snap.3-T1, internal, 815, 919
-recovered snap_scaffold_296-snap.3-T1, internal, 1813, 2290
Valid prediction for GlimmerHMM_glimmerT_60152-T1
Couldn't classify 8079, 8252
Sorry, prediction snap_scaffold_296-snap.1-T1 fails validation.
(ATG)	 AG	2599-3028	GT	GAG
(ATT)	 AG	7389-7479	GT	AAG
(TCA)	 AG	7497-7653	GT	AGG
(AGG)	 AG	8079-8252	GT	GTG
-recovered snap_scaffold_296-snap.1-T1, initial, 2599, 3028
-recovered snap_scaffold_296-snap.1-T1, terminal, 7389, 7479
-recovered snap_scaffold_296-snap.1-T1, internal, 2599, 3028
-recovered snap_scaffold_296-snap.1-T1, internal, 7389, 7479
-recovered snap_scaffold_296-snap.1-T1, internal, 7497, 7653
-recovered snap_scaffold_296-snap.1-T1, internal, 8079, 8252
Valid prediction for GlimmerHMM_glimmerT_60151-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5878, rend_intergenic: 293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6535, rend_intergenic: 6001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8476
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5878, rend_intergenic: 293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6535, rend_intergenic: 6001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support